Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004596`

染色体: Chr07 坐标: 58753575-58756091 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004596`
名称	SmilChr07G004596
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58753575 - 58756091 / `+`

ID 对照

NCBI Gene ID	`LOC130995178`
GeneID	`130995178`
locus_tag	`-`
NCBI Name	`LOC130995178`
原始查询	`LOC130995178`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=29.5; qcov=0.817; evalue=2.62e-19; confidence=low
Rice	`Os03g0281100` (OsSTA96) - identity=27.8; qcov=0.853; evalue=2.94e-16; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995178

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776314.1`
2	Cytosol	细胞质基质	0.60000	`XP_057776315.1`
3	Cytoplasm	细胞质	0.40000	`XP_057776315.1`
4	Nucleus	细胞核	0.00000	`XP_057776314.1`
5	Chromosome	染色体	0.00000	`XP_057776314.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58753731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C59,D10
`Chr7:58753803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C58,C59,D10
`Chr7:58753820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr7:58753827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,C3
`Chr7:58753920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,C16,C3
`Chr7:58754016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,C55
`Chr7:58754152`	`TGC`	`T`	2bp_deletion	frameshift_variant	18	A5,A8,A9,B101,B105,B111,B118,B21,B39,B81,B83,B86,B89,C49,C58,C59,C81,D5
`Chr7:58754214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B92
`Chr7:58754233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B140,B26
`Chr7:58754247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr7:58754275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr7:58755334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776314.1

414 aa

207

414

Ank_2

Ank

Ank_3

Ank_4

Ank_5

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-219 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 252-351 aa

XP_057776315.1

224 aa

112

224

Ank_2

Ank

Ank_3

Ank_2

Ank

Ank_4

PF12796 Ank_2 10-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-191 aa PF00023 Ank 144-165 aa PF13637 Ank_4 147-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776314.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	4.9e-27	95.1	Ankyrin repeats (3 copies)
`XP_057776314.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	4.9e-27	95.1	Ankyrin repeats (3 copies)
`XP_057776314.1`	Pfam	`PF00023`	Ank	Repeat	108	131	2.3e-20	72.2	Ankyrin repeat
`XP_057776314.1`	Pfam	`PF13606`	Ank_3	Repeat	108	131	2.2e-21	74.1	Ankyrin repeat
`XP_057776314.1`	Pfam	`PF13637`	Ank_4	Repeat	147	197	2.8e-18	66.3	Ankyrin repeats (many copies)
`XP_057776314.1`	Pfam	`PF13857`	Ank_5	Repeat	162	218	7.6e-17	61.9	Ankyrin repeats (many copies)
`XP_057776314.1`	Pfam	`PF12796`	Ank_2	Repeat	171	219	4.9e-27	95.1	Ankyrin repeats (3 copies)
`XP_057776314.1`	Pfam	`PF00023`	Ank	Repeat	176	201	2.3e-20	72.2	Ankyrin repeat
`XP_057776314.1`	Pfam	`PF13606`	Ank_3	Repeat	176	204	2.2e-21	74.1	Ankyrin repeat
`XP_057776314.1`	Pfam	`PF13962`	PGG	Domain	252	351	2e-20	73.4	Domain of unknown function
`XP_057776315.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	1.9e-31	109.2	Ankyrin repeats (3 copies)
`XP_057776315.1`	Pfam	`PF12796`	Ank_2	Repeat	79	165	1.9e-31	109.2	Ankyrin repeats (3 copies)
`XP_057776315.1`	Pfam	`PF00023`	Ank	Repeat	108	131	2e-17	63.0	Ankyrin repeat
`XP_057776315.1`	Pfam	`PF13606`	Ank_3	Repeat	108	131	1.9e-18	65.1	Ankyrin repeat
`XP_057776315.1`	Pfam	`PF12796`	Ank_2	Repeat	114	191	1.9e-31	109.2	Ankyrin repeats (3 copies)
`XP_057776315.1`	Pfam	`PF00023`	Ank	Repeat	144	165	2e-17	63.0	Ankyrin repeat
`XP_057776315.1`	Pfam	`PF13637`	Ank_4	Repeat	147	190	8.6e-16	58.4	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920332.1
AGGAAATTATGCAGAAAATTCTCTTCATGATCACTTTAAAAAATTGTCATTATATAAACATCTCCAGAATTCTTGACTGCCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACTAGGTGATGCAACAAGGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATC...

XM_057920331.1
TATGCAGAAAATTCTCTTCATGATCACTTTAAAAAATTGTCATTATATAAACATCTCCAGAATTCTTGACTGCCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACTAGGTGATGCAACAAGGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATCTTCTCCA...

CDS

2 records

下载 CDS FASTA

LOC130995178
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACTAGGTGATGCAACAAGGTTTCAACAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATCTTCTCCACATAGCAACAAGAAGCGGACAAGCATCCATTGTTGAAGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGTCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

2 records

下载 Protein FASTA

XP_057776314.1
MVREVIRKKLYDAATLGDATRFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTSWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISRQSPQDTIQSEITKILEQITTIKFSNISLNKVSIELVLMVA...

XP_057776315.1
MVREVIRKKLYDAATLGDATRFQQLLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTSWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEKTLELNINVQGIPIEKQLWTSPARAPKTQFNLR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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