当前解析结果
SmilChr07G004606| 统一新 Gene ID | SmilChr07G004606 |
|---|---|
| 名称 | SmilChr07G004606 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58854355 - 58857864 / + |
| NCBI Gene ID | LOC130995180 |
|---|---|
| GeneID | 130995180 |
| locus_tag | - |
| NCBI Name | LOC130995180 |
| 原始查询 | LOC130995180 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=26.3; qcov=1.06; evalue=2.65e-33; confidence=low |
| Rice | Os11g0182900- identity=27.2; qcov=0.963; evalue=2.09e-28; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995180 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776316.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776316.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776316.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776316.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776316.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58854899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C55 |
Chr7:58855033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B34,C15 |
Chr7:58855047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr7:58855076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D5 |
Chr7:58855106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:58855244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:58855268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C1,C57 |
Chr7:58855375 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | D11 |
Chr7:58855375 |
T |
TG |
1bp_insertion | CDS_variant | 1 | D11 |
Chr7:58856772 |
GGT |
G |
2bp_deletion | frameshift_variant | 34 | A10,A21,A6,B1,B12,B120,B121,B125,B127,B128,B13,B14,B140,B25,B29,B33,B47,B55,B62,B70,B72,B86,C15,C21,C24,C37,C40,C44,C55,C67,C71,C8,C83,D3 |
Chr7:58856793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,A2,B32,B92,C85 |
Chr7:58856802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B101,B44,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776316.1PF12796
Ank_2 8-93 aa
PF00023
Ank 75-93 aa
PF12796
Ank_2 107-166 aa
PF13637
Ank_4 111-161 aa
PF13637
Ank_4 145-195 aa
PF00023
Ank 174-195 aa
PF13606
Ank_3 174-196 aa
PF13962
PGG 248-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776316.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 8 | 93 | 8.1e-29 | 100.8 | Ankyrin repeats (3 copies) |
XP_057776316.1 |
Pfam | PF00023 |
Ank | Repeat | 75 | 93 | 7.6e-23 | 80.0 | Ankyrin repeat |
XP_057776316.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 107 | 166 | 8.1e-29 | 100.8 | Ankyrin repeats (3 copies) |
XP_057776316.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 111 | 161 | 1.3e-22 | 80.0 | Ankyrin repeats (many copies) |
XP_057776316.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 145 | 195 | 1.3e-22 | 80.0 | Ankyrin repeats (many copies) |
XP_057776316.1 |
Pfam | PF00023 |
Ank | Repeat | 174 | 195 | 7.6e-23 | 80.0 | Ankyrin repeat |
XP_057776316.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 174 | 196 | 1.2e-22 | 77.9 | Ankyrin repeat |
XP_057776316.1 |
Pfam | PF13962 |
PGG | Domain | 248 | 355 | 1.5e-24 | 86.8 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。