Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004612`

染色体: Chr07 坐标: 58931311-58935241 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004612`
名称	SmilChr07G004612
描述	ankyrin repeat-containing protein At2g01680-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58931311 - 58935241 / `+`

ID 对照

NCBI Gene ID	`LOC130995185`
GeneID	`130995185`
locus_tag	`-`
NCBI Name	`LOC130995185`
原始查询	`LOC130995185`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At2g01680-like
产物	ankyrin repeat-containing protein At2g01680-like
Arabidopsis	`AT4G10720` (AT4G10720) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=27.2; qcov=0.875; evalue=4.26e-26; confidence=low
Rice	`Os11g0182900` - identity=26.4; qcov=0.762; evalue=1.5e-24; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995185

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776321.1`
2	Nucleus	细胞核	0.00000	`XP_057776321.1`
3	Chromosome	染色体	0.00000	`XP_057776321.1`
4	Centromere	着丝粒	0.00000	`XP_057776321.1`
5	Chromatin	染色质	0.00000	`XP_057776321.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58931371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B47,B60,C39,C87,D10
`Chr7:58931375`	`A`	`ACC`	2bp_insertion	frameshift_variant	19	A14,A5,B10,B117,B118,B124,B139,B37,B42,B43,B54,B69,C17,C22,C50,C58,C66,C80,C85
`Chr7:58931400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B26,D4
`Chr7:58931413`	`AT`	`A`	1bp_deletion	frameshift_variant	40	B102,B103,B109,B128,B129,B134,B15,B21,B23,B29,B3,B30,B39,B63,B75,B78,B90,C11,C12,C14,C20,C23,C28,C30,C32,C38,C40,C45,C55,C68,C69,C70,C71,C77,C79,C82,D11,D3,D4,D7
`Chr7:58931425`	`TC`	`T`	1bp_deletion	frameshift_variant	8	B124,B23,B41,B55,C37,C63,C8,D8
`Chr7:58931502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B138,B22,C72,C76,C84
`Chr7:58931515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr7:58931529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B137,B49,C25,C53
`Chr7:58931555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B127,B42,B6,D1
`Chr7:58931566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,B22
`Chr7:58931590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B26,B72,C24,C49,D4
`Chr7:58931663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776321.1

407 aa

204

407

Ank_2

Ank

Ank_4

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 11-97 aa PF12796 Ank_2 73-131 aa PF00023 Ank 78-96 aa PF13637 Ank_4 80-127 aa PF12796 Ank_2 143-198 aa PF13637 Ank_4 148-198 aa PF00023 Ank 177-198 aa PF13606 Ank_3 177-199 aa PF13962 PGG 249-357 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776321.1`	Pfam	`PF12796`	Ank_2	Repeat	11	97	5.6e-35	120.5	Ankyrin repeats (3 copies)
`XP_057776321.1`	Pfam	`PF12796`	Ank_2	Repeat	73	131	5.6e-35	120.5	Ankyrin repeats (3 copies)
`XP_057776321.1`	Pfam	`PF00023`	Ank	Repeat	78	96	1.9e-21	75.7	Ankyrin repeat
`XP_057776321.1`	Pfam	`PF13637`	Ank_4	Repeat	80	127	4.1e-17	62.6	Ankyrin repeats (many copies)
`XP_057776321.1`	Pfam	`PF12796`	Ank_2	Repeat	143	198	5.6e-35	120.5	Ankyrin repeats (3 copies)
`XP_057776321.1`	Pfam	`PF13637`	Ank_4	Repeat	148	198	4.1e-17	62.6	Ankyrin repeats (many copies)
`XP_057776321.1`	Pfam	`PF00023`	Ank	Repeat	177	198	1.9e-21	75.7	Ankyrin repeat
`XP_057776321.1`	Pfam	`PF13606`	Ank_3	Repeat	177	199	1.2e-16	59.6	Ankyrin repeat
`XP_057776321.1`	Pfam	`PF13962`	PGG	Domain	249	357	1.1e-23	84.0	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920338.1
TTGCTTGTATGTAAAACAATATTAATTAGAAAAAAGCCATTGAAAGAATGGTTGGAGAAGCAGCAATAGAAAAGAAACTATATGATGCTGCAAGAAAGGGAGATTTATCAACATTCCAACAACTGCTGCAAGAAGATCCACACCTTCTTGATGCCGTTTCATTTCCATTTTCGAGAAATGTATTACCCATAGCAGTAATTTATGGACAAGTGAGCATCGTGGAAGAGGTGTTGAAGATCAACCCGCGGCTAGCTCGGATT...

CDS

1 records

下载 CDS FASTA

LOC130995185
ATGGTTGGAGAAGCAGCAATAGAAAAGAAACTATATGATGCTGCAAGAAAGGGAGATTTATCAACATTCCAACAACTGCTGCAAGAAGATCCACACCTTCTTGATGCCGTTTCATTTCCATTTTCGAGAAATGTATTACCCATAGCAGTAATTTATGGACAAGTGAGCATCGTGGAAGAGGTGTTGAAGATCAACCCGCGGCTAGCTCGGATTTCAGACTCCCAAAAATCGTCGCCTCTTCACATTGCTGTAGAAGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057776321.1
MVGEAAIEKKLYDAARKGDLSTFQQLLQEDPHLLDAVSFPFSRNVLPIAVIYGQVSIVEEVLKINPRLARISDSQKSSPLHIAVEEGKLEMVKRLLSVAPETCWWRDDQGMNAVHVAAVRGRVEILEEMLQLDLLPAMERLHRGQTVLHLCVKHRQLSTLKVLVHKFDEFVGAKDDDGETLLHLAARSNHEEITRYLVLSDKVREFITMDSINKIFLNVRPRDPSATYPENKRVLEIFAAGKSTLETLPKLTDMTMVVAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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