当前解析结果
SmilChr07G004639| 统一新 Gene ID | SmilChr07G004639 |
|---|---|
| 名称 | SmilChr07G004639 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59260938 - 59264731 / - |
| NCBI Gene ID | LOC130995188 |
|---|---|
| GeneID | 130995188 |
| locus_tag | - |
| NCBI Name | LOC130995188 |
| 原始查询 | LOC130995188 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.6; qcov=0.986; evalue=9.76e-76; confidence=low |
| Rice | Os07g0186500- identity=31; qcov=0.786; evalue=4.41e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995188 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057776323.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057776323.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057776323.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776323.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776323.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59261898 |
CTT |
C |
2bp_deletion | frameshift_variant | 2 | B131,B17 |
Chr7:59261901 |
C |
CAT |
2bp_insertion | frameshift_variant | 2 | B131,B17 |
Chr7:59261901 |
C |
CAT |
2bp_insertion | CDS_variant | 2 | B131,B17 |
Chr7:59261932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,C27,C86 |
Chr7:59261963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr7:59262072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B4,D11 |
Chr7:59262194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:59262195 |
AAT |
A |
2bp_deletion | frameshift_variant | 22 | A3,B100,B102,B107,B120,B131,B133,B137,B16,B17,B42,B64,C3,C33,C42,C43,C44,C64,C66,C74,C76,C77 |
Chr7:59262223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,D4 |
Chr7:59262225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:59262235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B35,B49,B93,C13 |
Chr7:59262247 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776323.1PF00931
NB-ARC 182-345 aa
PF23559
WHD_DRP 430-501 aa
PF23598
LRR_14 542-853 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776323.1 |
Pfam | PF00931 |
NB-ARC | Domain | 182 | 345 | 1.5e-41 | 142.6 | NB-ARC domain |
XP_057776323.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 501 | 2.2e-16 | 60.3 | Disease resistance protein Winged helix domain |
XP_057776323.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 542 | 853 | 6.4e-14 | 52.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。