Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004623`

染色体: Chr07 坐标: 59044655-59049504 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004623`
名称	SmilChr07G004623
描述	mechanosensitive ion channel protein 10-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59044655 - 59049504 / `+`

ID 对照

NCBI Gene ID	`LOC130995191`
GeneID	`130995191`
locus_tag	`-`
NCBI Name	`LOC130995191`
原始查询	`LOC130995191`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mechanosensitive ion channel protein 10-like
产物	mechanosensitive ion channel protein 10-like
Arabidopsis	`AT5G12080` (MSL10) mechanosensitive channel of small conductance-like 10 [Source:NCBI gene (formerly Entrezgene);Acc:831081] identity=54; qcov=0.96; evalue=0; confidence=high
Rice	`Os06g0205600` - identity=49.8; qcov=0.913; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0008381 (mechanosensitive monoatomic ion channel activity); GO:0050982 (detection of mechanical stimulus); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00924 (MS_channel_2nd); PF25886 (Msy1)
InterPro	-
eggNOG	-
NR	GeneID:130995191

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776325.1`
2	Nucleus	细胞核	0.00000	`XP_057776325.1`
3	Chromosome	染色体	0.00000	`XP_057776325.1`
4	Centromere	着丝粒	0.00000	`XP_057776325.1`
5	Chromatin	染色质	0.00000	`XP_057776325.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59045279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr7:59045391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:59045671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B136,B88,D6
`Chr7:59045906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B136,B88,D6
`Chr7:59046433`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	B115
`Chr7:59046433`	`A`	`AAT`	2bp_insertion	CDS_variant	1	B115
`Chr7:59046870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B131,B67,B83,C59
`Chr7:59046873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B48,C18,D9
`Chr7:59048117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C84
`Chr7:59048184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:59048685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,C18,D9
`Chr7:59048883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776325.1

772 aa

386

772

Msy1

MS_channel_2nd

PF25886 Msy1 188-340 aa PF00924 MS_channel_2nd 598-654 aa

XP_057776326.1

772 aa

386

772

Msy1

MS_channel_2nd

PF25886 Msy1 188-340 aa PF00924 MS_channel_2nd 598-654 aa

XP_057776327.1

772 aa

386

772

Msy1

MS_channel_2nd

PF25886 Msy1 188-340 aa PF00924 MS_channel_2nd 598-654 aa

XP_057776328.1

772 aa

386

772

Msy1

MS_channel_2nd

PF25886 Msy1 188-340 aa PF00924 MS_channel_2nd 598-654 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776325.1`	Pfam	`PF25886`	Msy1	Domain	188	340	3.2e-06	27.9	Mechanosensitive ion channel protein Msy1-like, transmembrane domain
`XP_057776325.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	598	654	3.3e-11	43.9	Mechanosensitive ion channel, beta-domain
`XP_057776326.1`	Pfam	`PF25886`	Msy1	Domain	188	340	3.2e-06	27.9	Mechanosensitive ion channel protein Msy1-like, transmembrane domain
`XP_057776326.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	598	654	3.3e-11	43.9	Mechanosensitive ion channel, beta-domain
`XP_057776327.1`	Pfam	`PF25886`	Msy1	Domain	188	340	3.2e-06	27.9	Mechanosensitive ion channel protein Msy1-like, transmembrane domain
`XP_057776327.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	598	654	3.3e-11	43.9	Mechanosensitive ion channel, beta-domain
`XP_057776328.1`	Pfam	`PF25886`	Msy1	Domain	188	340	3.2e-06	27.9	Mechanosensitive ion channel protein Msy1-like, transmembrane domain
`XP_057776328.1`	Pfam	`PF00924`	MS_channel_2nd	Domain	598	654	3.3e-11	43.9	Mechanosensitive ion channel, beta-domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009092089.1
AATTTCGATATTCAAATATTTCTTCTTCTCCTTCATGCTTTTCCCTCTCGCACCAGTCACCACCTGCGCTTTTTCTTCTCTTTCACACACACACACTGACACACTCGGACTCACTCTTTGTCTGCTTCTATTGCTGAACGCCCTCTCCCTCTCTCGCAAACAGATACTCGCCCGCATGTGAGACAAGGAGAAATTTGTGTTTAACAAAAGCTGCCATATCAAAGATTACGAATTTCGATGGCGCGCTGTTGTTTATTCAA...

XM_057920342.1
TATTTATTGCACAAATTTCGATATTCAAATATTTCTTCTTCTCCTTCATGCTTTTCCCTCTCGCACCAGTCACCACCTGCGCTTTTTCTTCTCTTTCACACACACACACTGACACACTCGGACTCACTCTTTGTCTGCTTCTATTGCTGAACGCCCTCTCCCTCTCTCGCAAACAGATACTCGCCCGCATGTGAGACAAGGAGAAATTTGTGTTTAACAAAAGCTGCCATATCAAAGATTACGAATTTCGATGGCGCGCT...

CDS

4 records

下载 CDS FASTA

LOC130995191
ATGGATGGAAATGGAAATGATAAAGCTCGAAAAAGTACCGGAGAGATTAGCATGATTGGGAATCAGAATAGAAGGGGTGATATGATAATTAATGTTTCTGAAGATGCAAAAGATTCAAAATCTGGCTTTTCAGCAGCATCACCTCTTAGAGAATCGAATGATTCGGCACTTAATGCACAAAAGTCGCCACCGATGAGCTACGCCTCACCTGAAACTGTGAGGATTGCTCCTATTGCTAGTAAGCCTCCCAAGATCCCCAC...

Protein

4 records

下载 Protein FASTA

XP_057776325.1
MDGNGNDKARKSTGEISMIGNQNRRGDMIINVSEDAKDSKSGFSAASPLRESNDSALNAQKSPPMSYASPETVRIAPIASKPPKIPTGEGLTRRKTLSRSVYSKPKARFGEQSVHIDGKMFDEDGPEVNVVPSRGASPNHVKADTGSASIKDRTVPITPKTPLMNSFRGLDEDEEIYKKVSSRKKLKYRKVRAKVLVEWLIFLCILGCLITSFTVHRLHHLKLWGLHLWKWFALVLVTFSGLLVTEWLMNFVVLLIELNY...

XP_057776326.1
MDGNGNDKARKSTGEISMIGNQNRRGDMIINVSEDAKDSKSGFSAASPLRESNDSALNAQKSPPMSYASPETVRIAPIASKPPKIPTGEGLTRRKTLSRSVYSKPKARFGEQSVHIDGKMFDEDGPEVNVVPSRGASPNHVKADTGSASIKDRTVPITPKTPLMNSFRGLDEDEEIYKKVSSRKKLKYRKVRAKVLVEWLIFLCILGCLITSFTVHRLHHLKLWGLHLWKWFALVLVTFSGLLVTEWLMNFVVLLIELNY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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