当前解析结果
SmilChr07G004615| 统一新 Gene ID | SmilChr07G004615 |
|---|---|
| 名称 | SmilChr07G004615 |
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58953252 - 58957914 / + |
| NCBI Gene ID | LOC130995202 |
|---|---|
| GeneID | 130995202 |
| locus_tag | - |
| NCBI Name | LOC130995202 |
| 原始查询 | LOC130995202 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 产物 | ankyrin repeat-containing protein NPR4-like |
| Arabidopsis | AT5G51160 (AT5G51160)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=28.2; qcov=0.798; evalue=3.16e-26; confidence=low |
| Rice | Os11g0182900- identity=25.9; qcov=0.98; evalue=2.77e-25; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995202 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776342.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776342.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776342.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776342.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776342.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58953382 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | B100,B102,B14,B17,B39,B47,B48,B91,B95,C18,C37,C44,C61,D9 |
Chr7:58953406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:58953436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:58953579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B14,B65,C51,D9 |
Chr7:58953588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B14,C51,C75 |
Chr7:58953590 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B124 |
Chr7:58953590 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B124 |
Chr7:58953591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B14,C51 |
Chr7:58953615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B98,C59 |
Chr7:58953645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B45,C2,C53,D6 |
Chr7:58953744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,D6 |
Chr7:58953754 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776342.1PF12796
Ank_2 10-96 aa
PF12796
Ank_2 45-130 aa
PF00023
Ank 76-95 aa
PF00023
Ank 110-130 aa
PF13637
Ank_4 113-163 aa
PF12796
Ank_2 113-204 aa
PF00023
Ank 143-164 aa
PF13637
Ank_4 147-195 aa
PF00023
Ank 176-200 aa
PF13962
PGG 248-357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776342.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 96 | 6.5e-33 | 113.9 | Ankyrin repeats (3 copies) |
XP_057776342.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 45 | 130 | 6.5e-33 | 113.9 | Ankyrin repeats (3 copies) |
XP_057776342.1 |
Pfam | PF00023 |
Ank | Repeat | 76 | 95 | 2.3e-21 | 75.4 | Ankyrin repeat |
XP_057776342.1 |
Pfam | PF00023 |
Ank | Repeat | 110 | 130 | 2.3e-21 | 75.4 | Ankyrin repeat |
XP_057776342.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 113 | 163 | 8.2e-15 | 55.3 | Ankyrin repeats (many copies) |
XP_057776342.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 113 | 204 | 6.5e-33 | 113.9 | Ankyrin repeats (3 copies) |
XP_057776342.1 |
Pfam | PF00023 |
Ank | Repeat | 143 | 164 | 2.3e-21 | 75.4 | Ankyrin repeat |
XP_057776342.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 195 | 8.2e-15 | 55.3 | Ankyrin repeats (many copies) |
XP_057776342.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 200 | 2.3e-21 | 75.4 | Ankyrin repeat |
XP_057776342.1 |
Pfam | PF13962 |
PGG | Domain | 248 | 357 | 2.3e-24 | 86.2 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。