当前解析结果
SmilChr07G004634| 统一新 Gene ID | SmilChr07G004634 |
|---|---|
| 名称 | SmilChr07G004634 |
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59178001 - 59180519 / - |
| NCBI Gene ID | LOC130995203 |
|---|---|
| GeneID | 130995203 |
| locus_tag | - |
| NCBI Name | LOC130995203 |
| 原始查询 | LOC130995203 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 产物 | ankyrin repeat-containing protein ITN1-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=25.8; qcov=0.992; evalue=7.63e-25; confidence=low |
| Rice | Os11g0182900- identity=23.2; qcov=0.995; evalue=6.31e-21; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995203 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776343.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776343.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776343.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776343.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59178065 |
G |
GA |
1bp_insertion | frameshift_variant | 27 | A25,B102,B12,B19,B23,B3,B48,B5,B72,B79,B9,B98,C15,C18,C19,C32,C35,C36,C40,C47,C76,C8,C84,C86,C9,D7,D9 |
Chr7:59178070 |
AT |
A |
1bp_deletion | frameshift_variant | 26 | A25,B102,B12,B19,B23,B48,B5,B60,B72,B79,B9,B98,C15,C18,C19,C32,C35,C40,C47,C76,C8,C84,C86,C9,D7,D9 |
Chr7:59178080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B90,C78,C85 |
Chr7:59178103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B128,B90,C78,C85 |
Chr7:59178246 |
TCC |
T |
2bp_deletion | frameshift_variant | 6 | A2,B4,C51,C52,C6,C7 |
Chr7:59178251 |
CGG |
C |
2bp_deletion | frameshift_variant | 6 | A2,B4,C51,C52,C6,C7 |
Chr7:59178255 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A2,B4,C51,C52,C6,C7 |
Chr7:59178372 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | C13 |
Chr7:59178372 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | C13 |
Chr7:59178417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C64 |
Chr7:59178446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr7:59178512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776343.1PF12796
Ank_2 19-91 aa
PF00023
Ank 72-90 aa
PF12796
Ank_2 103-160 aa
PF00023
Ank 105-125 aa
PF13637
Ank_4 108-158 aa
PF00023
Ank 138-162 aa
PF13962
PGG 244-349 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776343.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 19 | 91 | 3.4e-26 | 92.3 | Ankyrin repeats (3 copies) |
XP_057776343.1 |
Pfam | PF00023 |
Ank | Repeat | 72 | 90 | 1.2e-20 | 73.2 | Ankyrin repeat |
XP_057776343.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 103 | 160 | 3.4e-26 | 92.3 | Ankyrin repeats (3 copies) |
XP_057776343.1 |
Pfam | PF00023 |
Ank | Repeat | 105 | 125 | 1.2e-20 | 73.2 | Ankyrin repeat |
XP_057776343.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 108 | 158 | 1.3e-19 | 70.5 | Ankyrin repeats (many copies) |
XP_057776343.1 |
Pfam | PF00023 |
Ank | Repeat | 138 | 162 | 1.2e-20 | 73.2 | Ankyrin repeat |
XP_057776343.1 |
Pfam | PF13962 |
PGG | Domain | 244 | 349 | 4.7e-21 | 75.5 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。