当前解析结果
SmilChr07G004637| 统一新 Gene ID | SmilChr07G004637 |
|---|---|
| 名称 | SmilChr07G004637 |
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59228857 - 59230479 / - |
| NCBI Gene ID | LOC130995205 |
|---|---|
| GeneID | 130995205 |
| locus_tag | - |
| NCBI Name | LOC130995205 |
| 原始查询 | LOC130995205 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein NPR4-like |
| 产物 | ankyrin repeat-containing protein NPR4-like |
| Arabidopsis | AT4G10720 (AT4G10720)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=25.9; qcov=1; evalue=1.44e-29; confidence=low |
| Rice | Os09g0334900- identity=27.3; qcov=0.985; evalue=3.73e-27; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995205 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776344.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776344.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776344.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776344.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776344.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59228972 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D8 |
Chr7:59228972 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D8 |
Chr7:59229069 |
C |
CAA |
2bp_insertion | frameshift_variant | 12 | B101,B127,B2,B40,B43,C32,C45,C61,C62,C80,D5,D6 |
Chr7:59229070 |
TTC |
T |
2bp_deletion | frameshift_variant | 12 | B101,B127,B2,B40,B43,C32,C45,C61,C62,C80,D5,D6 |
Chr7:59229110 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | A15,B111,B26,B55,B60,C44 |
Chr7:59229113 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | A15,B26,B55,B60,C44 |
Chr7:59229113 |
AC |
A |
1bp_deletion | CDS_variant | 5 | A15,B26,B55,B60,C44 |
Chr7:59229122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,D4 |
Chr7:59229131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr7:59229134 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B109,C37,C68 |
Chr7:59229134 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B109,C37,C68 |
Chr7:59229149 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776344.1PF12796
Ank_2 18-91 aa
PF00023
Ank 72-90 aa
PF12796
Ank_2 103-160 aa
PF00023
Ank 105-125 aa
PF13606
Ank_3 105-127 aa
PF00023
Ank 138-162 aa
PF13637
Ank_4 142-191 aa
PF13606
Ank_3 171-194 aa
PF13962
PGG 242-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776344.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 18 | 91 | 4.9e-26 | 91.8 | Ankyrin repeats (3 copies) |
XP_057776344.1 |
Pfam | PF00023 |
Ank | Repeat | 72 | 90 | 5.9e-22 | 77.2 | Ankyrin repeat |
XP_057776344.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 103 | 160 | 4.9e-26 | 91.8 | Ankyrin repeats (3 copies) |
XP_057776344.1 |
Pfam | PF00023 |
Ank | Repeat | 105 | 125 | 5.9e-22 | 77.2 | Ankyrin repeat |
XP_057776344.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 105 | 127 | 7.1e-23 | 78.7 | Ankyrin repeat |
XP_057776344.1 |
Pfam | PF00023 |
Ank | Repeat | 138 | 162 | 5.9e-22 | 77.2 | Ankyrin repeat |
XP_057776344.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 142 | 191 | 8.4e-20 | 71.1 | Ankyrin repeats (many copies) |
XP_057776344.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 171 | 194 | 7.1e-23 | 78.7 | Ankyrin repeat |
XP_057776344.1 |
Pfam | PF13962 |
PGG | Domain | 242 | 346 | 1.1e-18 | 67.8 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。