Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004618`

染色体: Chr07 坐标: 58974009-58977162 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004618`
名称	SmilChr07G004618
描述	ankyrin repeat-containing protein At2g01680-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58974009 - 58977162 / `+`

ID 对照

NCBI Gene ID	`LOC130995217`
GeneID	`130995217`
locus_tag	`-`
NCBI Name	`LOC130995217`
原始查询	`LOC130995217`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At2g01680-like
产物	ankyrin repeat-containing protein At2g01680-like
Arabidopsis	`AT2G01680` (AT2G01680) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814697] identity=29.1; qcov=0.831; evalue=1.14e-18; confidence=low
Rice	`Os11g0182900` - identity=32.4; qcov=0.715; evalue=4.8e-19; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130995217

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057776398.1`
2	Cytosol	细胞质基质	0.60000	`XP_057776398.1`
3	Cell membrane	细胞膜	0.20000	`XP_057776398.1`
4	Nucleus	细胞核	0.00000	`XP_057776398.1`
5	Chromosome	染色体	0.00000	`XP_057776398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58976608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B27,B53,C49
`Chr7:58976656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B53,C49
`Chr7:58976657`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B101,B122,B131,C27
`Chr7:58976657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B122,B131,C27
`Chr7:58976678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:58976744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,D4
`Chr7:58976773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B98,C25,C48,C73
`Chr7:58976782`	`GT`	`G`	1bp_deletion	frameshift_variant	2	A3,B112
`Chr7:58976782`	`GT`	`G`	1bp_deletion	CDS_variant	2	A3,B112
`Chr7:58976899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr7:58976908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr7:58976917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B58,C22,C50,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776398.1

207 aa

104

207

Ank_2

Ank

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_4

PF12796 Ank_2 7-93 aa PF12796 Ank_2 70-127 aa PF00023 Ank 74-92 aa PF12796 Ank_2 105-162 aa PF00023 Ank 107-126 aa PF13637 Ank_4 110-160 aa PF12796 Ank_2 110-189 aa PF00023 Ank 140-162 aa PF13637 Ank_4 144-189 aa

XP_057776399.1

207 aa

104

207

Ank_2

Ank

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_4

XP_057776400.1

207 aa

104

207

Ank_2

Ank

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_4

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776398.1`	Pfam	`PF12796`	Ank_2	Repeat	7	93	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776398.1`	Pfam	`PF12796`	Ank_2	Repeat	70	127	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776398.1`	Pfam	`PF00023`	Ank	Repeat	74	92	2.3e-19	69.1	Ankyrin repeat
`XP_057776398.1`	Pfam	`PF12796`	Ank_2	Repeat	105	162	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776398.1`	Pfam	`PF00023`	Ank	Repeat	107	126	2.3e-19	69.1	Ankyrin repeat
`XP_057776398.1`	Pfam	`PF13637`	Ank_4	Repeat	110	160	1.3e-17	64.2	Ankyrin repeats (many copies)
`XP_057776398.1`	Pfam	`PF12796`	Ank_2	Repeat	110	189	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776398.1`	Pfam	`PF00023`	Ank	Repeat	140	162	2.3e-19	69.1	Ankyrin repeat
`XP_057776398.1`	Pfam	`PF13637`	Ank_4	Repeat	144	189	1.3e-17	64.2	Ankyrin repeats (many copies)
`XP_057776399.1`	Pfam	`PF12796`	Ank_2	Repeat	7	93	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776399.1`	Pfam	`PF12796`	Ank_2	Repeat	70	127	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776399.1`	Pfam	`PF00023`	Ank	Repeat	74	92	2.3e-19	69.1	Ankyrin repeat
`XP_057776399.1`	Pfam	`PF12796`	Ank_2	Repeat	105	162	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776399.1`	Pfam	`PF00023`	Ank	Repeat	107	126	2.3e-19	69.1	Ankyrin repeat
`XP_057776399.1`	Pfam	`PF13637`	Ank_4	Repeat	110	160	1.3e-17	64.2	Ankyrin repeats (many copies)
`XP_057776399.1`	Pfam	`PF12796`	Ank_2	Repeat	110	189	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776399.1`	Pfam	`PF00023`	Ank	Repeat	140	162	2.3e-19	69.1	Ankyrin repeat
`XP_057776399.1`	Pfam	`PF13637`	Ank_4	Repeat	144	189	1.3e-17	64.2	Ankyrin repeats (many copies)
`XP_057776400.1`	Pfam	`PF12796`	Ank_2	Repeat	7	93	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776400.1`	Pfam	`PF12796`	Ank_2	Repeat	70	127	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776400.1`	Pfam	`PF00023`	Ank	Repeat	74	92	2.3e-19	69.1	Ankyrin repeat
`XP_057776400.1`	Pfam	`PF12796`	Ank_2	Repeat	105	162	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776400.1`	Pfam	`PF00023`	Ank	Repeat	107	126	2.3e-19	69.1	Ankyrin repeat
`XP_057776400.1`	Pfam	`PF13637`	Ank_4	Repeat	110	160	1.3e-17	64.2	Ankyrin repeats (many copies)
`XP_057776400.1`	Pfam	`PF12796`	Ank_2	Repeat	110	189	4.9e-36	123.9	Ankyrin repeats (3 copies)
`XP_057776400.1`	Pfam	`PF00023`	Ank	Repeat	140	162	2.3e-19	69.1	Ankyrin repeat
`XP_057776400.1`	Pfam	`PF13637`	Ank_4	Repeat	144	189	1.3e-17	64.2	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920417.1
TAATTATGCTAATCATGTGTGAACCACTAGCTTTACTTGATGCAAAAATAAAACATTATATAAACTGCATGCAGAGCAGAAGACCTTATATGCTATTATAGTTCATCATTTGAGATCAAGCAGCTCTCTCCTTCTAATTAAGCCACCATTTTAATAAAGGTGGGCCCCAGCTCTCTCGCTCCTTGAGTTTGCTTGCTCAGATCTGGTGCCTCACCGCCCCTCTTCCCTCTTTCCTCTGCTCTCCGGTGACCGTCGCTGCC...

XM_057920415.1
TAATTATGCTAATCATGTGTGAACCACTAGCTTTACTTGATGCAAAAATAAAACATTATATAAACTGCATGCAGAGCAGAAGACCTTATATGCTATTATAGTTCATCATTTGAGATCAAGCAGCTCTCTCCTTCTAATTAAGCCACCATTTTAATAAAGCTCTCTCGCTCCTTGAGTTTGCTTGCTCAGATCTGGTGCCTCACCGCCCCTCTTCCCTCTTTCCTCTGCTCTCCGGTGACCGTCGCTGCCTACCGCCCTAA...

CDS

3 records

下载 CDS FASTA

LOC130995217
ATGAATAATGGTGAAAGACTTTATTATGCCATATTGAATGGGGATGTAACAACATTTCAAGAAGTGCTGCAACAAGATCGATATCTTGTTGAAAGTGTCTCATTTGCATGTTCAAGAAATGTTGTACACATAGCTACACTGCGGGGGCGAGTAGCCATTGTTGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGAGATTTGGACTCCCAACAATCATCGCCTCTTCACATTGCAGCAACACAAGGGAACGTTGTGAT...

Protein

3 records

下载 Protein FASTA

XP_057776398.1
MNNGERLYYAILNGDVTTFQEVLQQDRYLVESVSFACSRNVVHIATLRGRVAIVEEVLNINPQLARDLDSQQSSPLHIAATQGNVVIARKLLSVAPEACWWRDCHDMNPIHIAAINGHEEVLKEMLKLDLFPAMERVHRGQTVLHLCVKHRQLSTLKLLVENFDEFLDAKDDDGETLLHLAARSNREEVSTNYFFVFVVLNSMKFVG

XP_057776399.1
MNNGERLYYAILNGDVTTFQEVLQQDRYLVESVSFACSRNVVHIATLRGRVAIVEEVLNINPQLARDLDSQQSSPLHIAATQGNVVIARKLLSVAPEACWWRDCHDMNPIHIAAINGHEEVLKEMLKLDLFPAMERVHRGQTVLHLCVKHRQLSTLKLLVENFDEFLDAKDDDGETLLHLAARSNREEVSTNYFFVFVVLNSMKFVG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器