当前解析结果
SmilChr07G004660| 统一新 Gene ID | SmilChr07G004660 |
|---|---|
| 名称 | SmilChr07G004660 |
| 描述 | G-protein coupled receptor 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59503168 - 59507386 / + |
| NCBI Gene ID | LOC130995230 |
|---|---|
| GeneID | 130995230 |
| locus_tag | - |
| NCBI Name | LOC130995230 |
| 原始查询 | LOC130995230 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-protein coupled receptor 1 |
| 产物 | G-protein coupled receptor 1 |
| Arabidopsis | AT1G48270 (GCR1)G-protein-coupled receptor 1 [Source:NCBI gene (formerly Entrezgene);Acc:841247] identity=74.9; qcov=1.02; evalue=1.21e-179; confidence=high |
| Rice | Os06g0199800 (OsGPCR)- identity=69.1; qcov=0.941; evalue=1.2e-156; confidence=high |
| GO | GO:0004930 (G protein-coupled receptor activity); GO:0005886 (plasma membrane); GO:0007166 (cell surface receptor signaling pathway); GO:0007189 (adenylate cyclase-activating G protein-coupled receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00002 (7tm_2); PF05462 (Dicty_CAR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776408.1 |
| 2 | Vesicle | 囊泡 | 0.20000 | XP_057776408.1 |
| 3 | Endosome | 内体 | 0.20000 | XP_057776408.1 |
| 4 | Endosome membrane | 内体膜 | 0.20000 | XP_057776408.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057776408.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59503401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C1 |
Chr7:59503449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:59503504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C76,C9 |
Chr7:59504254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr7:59504263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr7:59504344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:59505355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:59505555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B18,B87,C5,C6 |
Chr7:59505600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:59505602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C49 |
Chr7:59506431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:59506455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776408.1PF00002
7tm_2 26-198 aa
PF05462
Dicty_CAR 26-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776408.1 |
Pfam | PF00002 |
7tm_2 | Domain | 26 | 198 | 1e-06 | 29.0 | 7 transmembrane receptor (Secretin family) |
XP_057776408.1 |
Pfam | PF05462 |
Dicty_CAR | Family | 26 | 278 | 4.2e-13 | 49.8 | Slime mold cyclic AMP receptor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。