Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004662`

染色体: Chr07 坐标: 59525703-59530717 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004662`
名称	SmilChr07G004662
描述	polyadenylate-binding protein-interacting protein 7-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59525703 - 59530717 / `+`

ID 对照

NCBI Gene ID	`LOC130995233`
GeneID	`130995233`
locus_tag	`-`
NCBI Name	`LOC130995233`
原始查询	`LOC130995233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein-interacting protein 7-like
产物	polyadenylate-binding protein-interacting protein 7-like
Arabidopsis	`AT2G26280` (CID7) CTC-interacting domain 7 [Source:NCBI gene (formerly Entrezgene);Acc:817168] identity=55; qcov=0.97; evalue=8.77e-150; confidence=high
Rice	`Os06g0199200` (B1172G12.23-1) - identity=41.1; qcov=1.03; evalue=1.43e-74; confidence=medium
GO	-
KEGG	-
Pfam	PF08590 (DUF1771)
InterPro	-
eggNOG	-
NR	GeneID:130995233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057776417.1`
2	Chloroplast	叶绿体	0.20000	`XP_057776416.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057776417.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057776416.1`
5	Nucleus	细胞核	0.00000	`XP_057776416.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59527030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C7,C71
`Chr7:59527184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr7:59527232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr7:59527451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B76,B98,C48,C9
`Chr7:59527518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:59527523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr7:59527550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B18,B87,C5
`Chr7:59527730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B3,B81,B87
`Chr7:59528365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:59528598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B3,B81,B87
`Chr7:59528655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr7:59528695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B29,B61,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776416.1

570 aa

285

570

DUF1771

PF08590 DUF1771 413-476 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776416.1`	Pfam	`PF08590`	DUF1771	Domain	413	476	2.5e-19	70.0	Domain of unknown function (DUF1771)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920433.1
ACGACAAATAATGAGAGAGAAAATCTTGTGGTCTAAAAACCTAAAAAAAATTGCATTAAAATTTATTTGAGAAAGAAAACTGAGAAAGAAAAAGCAAAGGGGCAAAAAAGGAATAATATTGGAGATGGTAAGAAGAGAGAGAAATGAAAAGCCTGAATTAGAGATAGAAAGATAGAGAGAGAAGAAAAAGATACAGCCCTCAGCTCATCTCCCCTACCTCACTTCACAGCCTCAAGAATCGTGAAAAAATAATTAGGAAA...

XM_057920434.1
CGACAAATAATGAGAGAGAAAATCTTGTGGTCTAAAAACCTAAAAAAAATTGCATTAAAATTTATTTGAGAAAGAAAACTGAGAAAGAAAAAGCAAAGGGGCAAAAAAGGAATAATATTGGAGATGGTAAGAAGAGAGAGAAATGAAAAGCCTGAATTAGAGATAGAAAGATAGAGAGAGAAGAAAAAGATACAGCCCTCAGCTCATCTCCCCTACCTCACTTCACAGCCTCAAGAATCGTGAAAAAATAATTAGGAAAA...

CDS

2 records

下载 CDS FASTA

LOC130995233
ATGTACTTGTCGGGAAAGGGAGCTTCTTCCGGTGACAAAAATCTTGGTGCTTCAAAACCGACTTTGAACCCTAACGCCACAGAATTTGTTCCTTTTGCTCTGAGATCACCTGTAGCTGGCGCTAATGGTGCGGAGGCATCCTCAAAATTTGTGATGTCCGCAGCTTCTGCCCCAGGGAAAGGAATATTAGACAGATCAGAGTCGTCAGTCTCGAATAACTCTGATGATGAAGCGCAGCAATACTGGCGCAATCAGCTCCC...

Protein

2 records

下载 Protein FASTA

XP_057776416.1
MYLSGKGASSGDKNLGASKPTLNPNATEFVPFALRSPVAGANGAEASSKFVMSAASAPGKGILDRSESSVSNNSDDEAQQYWRNQLPDDITPDFKVMGIDDNQGVNNLSFSSLSLTDTNEGSRYSSSIGSGFMLKEQQGLSPRPVNGNSHAEQLRYPVSSYGEYLSPTSYHSSLSKPWDQQIVGNDQLLAREGTDGGNPRHGLLADMSSEQLMLDNSDVSPLEFLASQFPGFAAESLAEVYFANGGDLNLTIEMLTQLEL...

XP_057776417.1
MYLSGKGASSGDKNLGASKPTLNPNATEFVPFALRSPVAGANGAEASSKFVMSAASAPGKGILDRSESSVSNNSDDEAQQYWRNQLPDDITPDFKVMGIDDNQGVNNLSFSSLSLTDTNEGSRYSSSIGSGFMLKEQQGLSPRPVNGNSHAEQLRYPVSSYGEYLSPTSYHSSLSKPWDQQIVGNDQLLAREGTDGGNPRHGLLADMSSEQLMLDNSDVSPLEFLASQFPGFAAESLAEVYFANGGDLNLTIEMLTQLEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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