Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004666`

染色体: Chr07 坐标: 59576098-59578503 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004666`
名称	SmilChr07G004666
描述	transcription factor HY5
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59576098 - 59578503 / `+`

ID 对照

NCBI Gene ID	`LOC130995237`
GeneID	`130995237`
locus_tag	`-`
NCBI Name	`LOC130995237`
原始查询	`LOC130995237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor HY5
产物	transcription factor HY5
Arabidopsis	`AT5G11260` (HY5) Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830996] identity=77; qcov=0.968; evalue=1.32e-59; confidence=high
Rice	`Os02g0203000` (OsbZIP18) - identity=65.6; qcov=1.04; evalue=1.24e-52; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0010017 (red or far-red light signaling pathway); GO:0010099 (regulation of photomorphogenesis); GO:0010114 (response to red light); GO:0010218 (response to far red light); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:130995237

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776425.1`
2	Chromosome	染色体	0.00000	`XP_057776425.1`
3	Centromere	着丝粒	0.00000	`XP_057776425.1`
4	Chromatin	染色质	0.00000	`XP_057776425.1`
5	Telomere	端粒	0.00000	`XP_057776425.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59576340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:59576923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr7:59576935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B29,B30,C47
`Chr7:59577440`	`C`	`CA`	1bp_insertion	frameshift_variant	14	A9,B118,B126,B131,B32,B63,B67,B83,C19,C28,C55,C61,D10,D11
`Chr7:59577538`	`GT`	`G`	1bp_deletion	frameshift_variant	170	A1,A11,A14,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A5,A6,A8,A9,B10,B100,B101,B102,B103,B108,B11,B110,B114,B115,B117,B118,B120,B121,B123,B125,B126,B127,B128,B13,B130,B131,B132,B135,B136,B138,B139,B14,B140,B15,B16,B18,B19,B2,B24,B25,B26,B27,B29,B3,B31,B32,B34,B35,B38,B39,B4,B40,B41,B42,B43,B44,B47,B48,B5,B50,B51,B52,B54,B57,B58,B59,B61,B62,B63,B64,B65,B67,B68,B7,B75,B77,B79,B80,B81,B82,B83,B84,B86,B87,B89,B9,B90,B92,B94,B97,B99,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C21,C22,C24,C25,C26,C27,C28,C3,C30,C33,C34,C36,C37,C39,C4,C42,C43,C45,C46,C49,C51,C52,C53,C55,C56,C58,C59,C6,C60,C61,C62,C63,C65,C69,C7,C70,C73,C74,C75,C76,C77,C78,C80,C81,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776425.1

192 aa

192

bZIP_2

bZIP_1

PF07716 bZIP_2 84-137 aa PF00170 bZIP_1 84-143 aa

XP_057776426.1

157 aa

157

bZIP_2

bZIP_1

PF07716 bZIP_2 84-137 aa PF00170 bZIP_1 84-145 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776425.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	84	137	5.9e-09	36.5	Basic region leucine zipper
`XP_057776425.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	84	143	1.2e-13	51.6	bZIP transcription factor
`XP_057776426.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	84	137	2.7e-09	37.7	Basic region leucine zipper
`XP_057776426.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	84	145	9.4e-14	52.0	bZIP transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920443.1
TTCCTTGTCTCTCCGCTTTCTCCAACATTTACGTCCCGCTTTTTTTTTCTTCTCTCTAGAAGGCTGAGTCACCGAGTCACACCCTACTACACTTCTCTCTCTCTCTAAAACAATTATTTATTTATTTTTTCAAAAAAAAAATCTCTCTCTCTCTCTCTCTTCTGCGTAATTCTTGGCTGTGATTTTTATTAGTTGGAGGAAATGCAAGAGCAAGCCACGAGTTCTATCGCCGCCAGCTCTTTGCCTTCTAGCAGTGAGAG...

XM_057920442.1
CAACATTTACGTCCCGCTTTTTTTTTCTTCTCTCTAGAAGGCTGAGTCACCGAGTCACACCCTACTACACTTCTCTCTCTCTCTAAAACAATTATTTATTTATTTTTTCAAAAAAAAAATCTCTCTCTCTCTCTCTCTTCTGCGTAATTCTTGGCTGTGATTTTTATTAGTTGGAGGAAATGCAAGAGCAAGCCACGAGTTCTATCGCCGCCAGCTCTTTGCCTTCTAGCAGTGAGAGATCTTCTAGCTCTGCGCTTCAC...

CDS

2 records

下载 CDS FASTA

LOC130995237
ATGCAAGAGCAAGCCACGAGTTCTATCGCCGCCAGCTCTTTGCCTTCTAGCAGTGAGAGATCTTCTAGCTCTGCGCTTCACGCTGAAGCTAAGGAAGGCATGGAGAGTGATGATGAGATCAGAAGGGTGCCGGAGATGGGGGCGGAGGCCGCCGGCACGACAACTTCCGGCCGCGACGGGGCTTCGTTGGCGGGGCCCGCGCAGCCGTCGGCCGGGGGCTCGAAGAGGAGGGGGAGGAGCCCGGCTGACAAGGAAAACAA...

Protein

2 records

下载 Protein FASTA

XP_057776425.1
MQEQATSSIAASSLPSSSERSSSSALHAEAKEGMESDDEIRRVPEMGAEAAGTTTSGRDGASLAGPAQPSAGGSKRRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRQVCYKSFKLFSRISCYNFELVSVSSRHENLVWLELILLLCLFEVILASLK

XP_057776426.1
MQEQATSSIAASSLPSSSERSSSSALHAEAKEGMESDDEIRRVPEMGAEAAGTTTSGRDGASLAGPAQPSAGGSKRRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRQILKNTTTGPQEGRK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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