当前解析结果
SmilChr07G004669| 统一新 Gene ID | SmilChr07G004669 |
|---|---|
| 名称 | SmilChr07G004669 |
| 描述 | adenine nucleotide transporter BT1, chloroplastic/mitochondrial-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 59615625 - 59619162 / - |
| NCBI Gene ID | LOC130995239 |
|---|---|
| GeneID | 130995239 |
| locus_tag | - |
| NCBI Name | LOC130995239 |
| 原始查询 | LOC130995239 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | adenine nucleotide transporter BT1, chloroplastic/mitochondrial-like |
| 产物 | adenine nucleotide transporter BT1%2C chloroplastic/mitochondrial-like |
| Arabidopsis | AT4G32400 (SHS1)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:829375] identity=66.4; qcov=0.995; evalue=2.72e-172; confidence=high |
| Rice | Os06g0602700 (BT1-3)- identity=66; qcov=1.02; evalue=2.3e-177; confidence=high |
| GO | GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057776431.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057776431.1 |
| 3 | Mitochondrion | 线粒体 | 0.40000 | XP_057776431.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057776431.1 |
| 5 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057776431.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:59615906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B30,B91,C30 |
Chr7:59615914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:59615936 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C34 |
Chr7:59615944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:59615946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B21,C34 |
Chr7:59615966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B68,C29 |
Chr7:59615967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:59615970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:59615978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:59616051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:59616087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:59616135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776431.1PF00153
Mito_carr 100-185 aa
PF00153
Mito_carr 193-280 aa
PF00153
Mito_carr 289-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776431.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 100 | 185 | 4.2e-74 | 245.1 | Mitochondrial carrier protein |
XP_057776431.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 193 | 280 | 4.2e-74 | 245.1 | Mitochondrial carrier protein |
XP_057776431.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 289 | 378 | 4.2e-74 | 245.1 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。