Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004686`

染色体: Chr07 坐标: 59804490-59807264 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004686`
名称	SmilChr07G004686
描述	probable inorganic phosphate transporter 1-7
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59804490 - 59807264 / `+`

ID 对照

NCBI Gene ID	`LOC130995252`
GeneID	`130995252`
locus_tag	`-`
NCBI Name	`LOC130995252`
原始查询	`LOC130995252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inorganic phosphate transporter 1-7
产物	probable inorganic phosphate transporter 1-7
Arabidopsis	`AT3G54700` (PHT1;7) phosphate transporter 1;7 [Source:NCBI gene (formerly Entrezgene);Acc:824635] identity=80.9; qcov=1; evalue=0; confidence=high
Rice	`Os04g0186400` (PT4) - identity=74.5; qcov=0.99; evalue=0; confidence=high
GO	GO:0005315 (phosphate transmembrane transporter activity); GO:0006817 (phosphate ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:130995252

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776448.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057776448.1`
3	Secretory vesicle	Secretory vesicle	0.20000	`XP_057776448.1`
4	Nucleus	细胞核	0.00000	`XP_057776448.1`
5	Chromosome	染色体	0.00000	`XP_057776448.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59805476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B4,B93,B98,C4,C71
`Chr7:59805497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:59805507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:59805638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:59805668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:59805669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,C48
`Chr7:59805684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:59805714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B1,B108,B13
`Chr7:59805783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr7:59805836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr7:59805845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,C76,D8
`Chr7:59805860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776448.1

523 aa

262

523

Sugar_tr

MFS_1

PF00083 Sugar_tr 27-514 aa PF07690 MFS_1 67-457 aa

XP_057776449.1

523 aa

262

523

Sugar_tr

MFS_1

PF00083 Sugar_tr 27-514 aa PF07690 MFS_1 67-457 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776448.1`	Pfam	`PF00083`	Sugar_tr	Family	27	514	2e-51	176.0	Sugar (and other) transporter
`XP_057776448.1`	Pfam	`PF07690`	MFS_1	Family	67	457	1.9e-21	77.1	Major Facilitator Superfamily
`XP_057776449.1`	Pfam	`PF00083`	Sugar_tr	Family	27	514	2e-51	176.0	Sugar (and other) transporter
`XP_057776449.1`	Pfam	`PF07690`	MFS_1	Family	67	457	1.9e-21	77.1	Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920466.1
AACTCAAACCATTCTCCACATTTACTTTAATAACTCAGCTTCTCTCTCTAAACAGAATTTGTTGCAGATAATAGAATTTGAAAGTGGGAAAATGGCGGACGACAAGAATCTAAAGGTGCTGAACGCACTAGACATGGCGAAGACGCAGTGGTACCATTTCACGGCGATCATAATCGCCGGCATGGGTTTCTTCACGGACGCATACGACCTATTTTGCATCTCCCTCGTCACCAAGATTCTTGGGCGCATCTACTACTACG...

XM_057920465.1
CTCCACATTTACTTTAATAACTCAGCTTCTCTCTCTAAACAGATAATAGAATTTGAAAGTGGGAAAATGGCGGACGACAAGAATCTAAAGGTGCTGAACGCACTAGACATGGCGAAGACGCAGTGGTACCATTTCACGGCGATCATAATCGCCGGCATGGGTTTCTTCACGGACGCATACGACCTATTTTGCATCTCCCTCGTCACCAAGATTCTTGGGCGCATCTACTACTACGTGGAGGGCTCCCCGAAACCCGGGTC...

CDS

2 records

下载 CDS FASTA

LOC130995252
ATGGCGGACGACAAGAATCTAAAGGTGCTGAACGCACTAGACATGGCGAAGACGCAGTGGTACCATTTCACGGCGATCATAATCGCCGGCATGGGTTTCTTCACGGACGCATACGACCTATTTTGCATCTCCCTCGTCACCAAGATTCTTGGGCGCATCTACTACTACGTGGAGGGCTCCCCGAAACCCGGGTCCCTCCCGCCCAACGTCTCTGCCGCCGTCAACGGTGTCGCCCTCTGCGGCACCCTGGCGGGGCAGCT...

Protein

2 records

下载 Protein FASTA

XP_057776448.1
MADDKNLKVLNALDMAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKILGRIYYYVEGSPKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGLTLMVMCICSIGSGLSFGRDAKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIFAMMLSAIFDAAFKSPPYEVDPAASTIPQADYLWRIVLMVGALPALLTFYWRLKMPETARYTALVAKDAKRAAADMAK...

XP_057776449.1
MADDKNLKVLNALDMAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKILGRIYYYVEGSPKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGLTLMVMCICSIGSGLSFGRDAKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIFAMMLSAIFDAAFKSPPYEVDPAASTIPQADYLWRIVLMVGALPALLTFYWRLKMPETARYTALVAKDAKRAAADMAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器