Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004710`

染色体: Chr07 坐标: 59963175-59964590 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004710`
名称	SmilChr07G004710
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	59963175 - 59964590 / `-`

ID 对照

NCBI Gene ID	`LOC130995277`
GeneID	`130995277`
locus_tag	`-`
NCBI Name	`LOC130995277`
原始查询	`LOC130995277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=30.1; qcov=1.07; evalue=2.84e-32; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=28.1; qcov=0.958; evalue=5.31e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130995277

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057776493.1`
2	Nucleus	细胞核	0.80000	`XP_057776493.1`
3	Cytosol	细胞质基质	0.20000	`XP_057776493.1`
4	Chromosome	染色体	0.00000	`XP_057776493.1`
5	Centromere	着丝粒	0.00000	`XP_057776493.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:59963374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B12,B55,B69,C38
`Chr7:59964000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B19,B8,B86,C81
`Chr7:59964027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C8
`Chr7:59964264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,B62
`Chr7:59964272`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B62
`Chr7:59964272`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B62
`Chr7:59964277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B62
`Chr7:59964278`	`G`	`GGT`	2bp_insertion	frameshift_variant	2	B30,B62
`Chr7:59964278`	`G`	`GGT`	2bp_insertion	CDS_variant	2	B30,B62
`Chr7:59964342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776493.1

353 aa

176

353

F-box

F-box-like

FBA_1

FBA_3

Beta-prop_KIB1-4

PF00646 F-box 11-50 aa PF12937 F-box-like 12-45 aa PF07734 FBA_1 103-347 aa PF08268 FBA_3 105-282 aa PF03478 Beta-prop_KIB1-4 106-290 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776493.1`	Pfam	`PF00646`	F-box	Domain	11	50	2.2e-13	50.2	F-box domain
`XP_057776493.1`	Pfam	`PF12937`	F-box-like	Domain	12	45	1.5e-09	38.2	F-box-like
`XP_057776493.1`	Pfam	`PF07734`	FBA_1	Repeat	103	347	4.5e-22	79.2	F-box associated beta propeller domain
`XP_057776493.1`	Pfam	`PF08268`	FBA_3	Repeat	105	282	1e-13	51.7	F-box associated beta propeller domain
`XP_057776493.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	106	290	1.5e-10	41.7	KIB1-4 beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920510.1
CAGAAAAATATTTTTATTATAAACTTTAATTGAATATAGTAAACCCTAATTTTGCTAATAGTAGCGCACAAATCGAGCAAAATAAGTATCAGATTGAGTTCACGTCTCTTATTCCTAAAATTAAAACCCATATAAACCAAAACCCTCGAAACATATATCGAAGCTTTGGCTATGGAGATCGCAGAACGTAGTAAAAAATCTCTCCATCTTCCGGAACAAATCATCGAAGAAATATTGTCAAGATTGCCGGTGAAATCACT...

CDS

1 records

下载 CDS FASTA

LOC130995277
ATGGAGATCGCAGAACGTAGTAAAAAATCTCTCCATCTTCCGGAACAAATCATCGAAGAAATATTGTCAAGATTGCCGGTGAAATCACTCTTGAGATTGAGGTGCGTTTCGAAATCATGGCGGTCTTTAATTGGCAGCAAACGTTTCATCAAAACCCAGCATCAAAATTCAATAAAAAACCCATCTTTCCCACAACAAAGGGTATTTTTACTGAACCGGATGTATCTTAGGCTTGAGCAATGTTCAATGCAGTCGATTTT...

Protein

1 records

下载 Protein FASTA

XP_057776493.1
MEIAERSKKSLHLPEQIIEEILSRLPVKSLLRLRCVSKSWRSLIGSKRFIKTQHQNSIKNPSFPQQRVFLLNRMYLRLEQCSMQSILSELLPRSSPLDDPMITTLMRFQIWGCYNGLLCVFDTHLRIHLWNPSTKISKKLPEISHPLIVRNYGFGWVESSDDYKVFVLSRVNHQCNWVGKVYSSKTKSWKTIRHCADLLSCCKEGVFVGGKLYWKKIGDEEDMIFLDLKSEVFGRIELPFDHEYCAGKNCWVGVLGDCLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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