Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001598`

染色体: Chr07 坐标: 13307967-13312633 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001598`
名称	SmilChr07G001598
描述	transcription factor bHLH74-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13307967 - 13312633 / `-`

ID 对照

NCBI Gene ID	`LOC130995307`
GeneID	`130995307`
locus_tag	`-`
NCBI Name	`LOC130995307`
原始查询	`LOC130995307`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH74-like
产物	transcription factor bHLH74-like
Arabidopsis	`AT1G10120` (AT1G10120) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837549] identity=55.9; qcov=0.62; evalue=2.3e-48; confidence=medium
Rice	`Os03g0728900` (OsbHLH084) - identity=73.1; qcov=0.38; evalue=4.2e-44; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH)
InterPro	-
eggNOG	-
NR	GeneID:130995307

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776528.1`
2	Chromosome	染色体	0.00000	`XP_057776528.1`
3	Centromere	着丝粒	0.00000	`XP_057776528.1`
4	Chromatin	染色质	0.00000	`XP_057776528.1`
5	Telomere	端粒	0.00000	`XP_057776528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13308160`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B106,C8
`Chr7:13308160`	`A`	`AT`	1bp_insertion	CDS_variant	2	B106,C8
`Chr7:13308333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B20,B57,B98,C48,C62
`Chr7:13308681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C82
`Chr7:13311740`	`C`	`CT`	1bp_insertion	frameshift_variant	4	A5,B59,C53,D1
`Chr7:13311740`	`C`	`CT`	1bp_insertion	CDS_variant	4	A5,B59,C53,D1
`Chr7:13311769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C75
`Chr7:13311900`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C2
`Chr7:13311900`	`TG`	`T`	1bp_deletion	CDS_variant	1	C2
`Chr7:13311985`	`ACT`	`A`	2bp_deletion	frameshift_variant	2	A21,B101
`Chr7:13311985`	`ACT`	`A`	2bp_deletion	CDS_variant	2	A21,B101
`Chr7:13311999`	`AGT`	`A`	2bp_deletion	frameshift_variant	2	A21,B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776528.1

257 aa

128

257

HLH

PF00010 HLH 120-168 aa

XP_057776529.1

245 aa

122

245

HLH

PF00010 HLH 120-168 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776528.1`	Pfam	`PF00010`	HLH	Domain	120	168	1.6e-05	25.3	Helix-loop-helix DNA-binding domain
`XP_057776529.1`	Pfam	`PF00010`	HLH	Domain	120	168	1.5e-05	25.4	Helix-loop-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920545.1
GTGATTCTCAGTATAGCCAGCAGAATTTGGTGCTTTCTGCTCCAACTTCAGTGCCCATATTGCCAGGATTACAAAAAGGGCAGGGTCCCATAAATATTTTTTATTTTTTCTTTTCGTGTAGATCAAAACGTGTAATCTAGCAAACAAGTAATGTCTATGAAGAATGTAGAAGAAAGCTTTAAGACTTATTTACCTTTTGATTAAAGAGTTAATCAAATTATCTGCCGGCTAAAGACATAGAGAGCATCTCTCTGCTTTCA...

XM_057920546.1
CTCAGTATAGCCAGCAGAATTTGGTGCTTTCTGCTCCAACTTCAGTGCCCATATTGCCAGGATTACAAAAAGGGCAGGGTCCCATAAATATTTTTTATTTTTTCTTTTCGTGTAGATCAAAACGTGTAATCTAGCAAACAAGTAATGTCTATGAAGAATGTAGAAGAAAGCTTTAAGACTTATTTACCTTTTGATTAAAGAGTTAATCAAATTATCTGCCGGCTAAAGACATAGAGAGCATCTCTCTGCTTTCATTAGTT...

CDS

2 records

下载 CDS FASTA

LOC130995307
ATGGCTGCAGATAATGTTGCAGAAATGTCAATTTTCTCAAAAGTAGACCATTTTTACAGTTGTGGTTGGGATGCCATGGTTTTGGGGAATGAAACAGCAACTTTTCTTGAAAATCAGACAAAGTTAAACTCTTCTGATTCTGGTTTAGCTGAAAGCATGCCAATGATTACTTCAGTTGGAGAAGTCGATGAATCTTGCAGTCACCCAGATTTTTTTCAAGATCGTTGTCAAAGTCCATCTAATGCAAAGAGGAAAAGAAA...

Protein

2 records

下载 Protein FASTA

XP_057776528.1
MAADNVAEMSIFSKVDHFYSCGWDAMVLGNETATFLENQTKLNSSDSGLAESMPMITSVGEVDESCSHPDFFQDRCQSPSNAKRKRNVSSSKNSQVDEKQTVDAEEKFVHIRAKKGQATSNHSLAKRVRRERISERMRLLQELVPGCDKITGKAVVLDEIINYVQSLQQQVEFLSMKLATVDPELNLDIQPTLSTHLRGSNGVGGTSSTCSQGNVPSLPQDLWNNELQSVLQTRFYPCSSSISMSGLLGNGLSEMEL

XP_057776529.1
MAADNVAEMSIFSKVDHFYSCGWDAMVLGNETATFLENQTKLNSSDSGLAESMPMITSVGEVDESCSHPDFFQDRCQSPSNAKRKRNVSSSKNSQVDEKQTVDAEEKFVHIRAKKGQATSNHSLAKRVRRERISERMRLLQELVPGCDKITGKAVVLDEIINYVQSLQQQVEFLSMKLATVDPELNLDIQPTLSTHLRGSNGVGGTSSTCSQGNVPSLPQGCRKWSCSIVSSKWRFVLMEMEIYL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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