Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003701`

染色体: Chr01 坐标: 55396510-55402111 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003701`
名称	SmilChr01G003701
描述	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55396510 - 55402111 / `-`

ID 对照

NCBI Gene ID	`LOC130995311`
GeneID	`130995311`
locus_tag	`-`
NCBI Name	`LOC130995311`
原始查询	`LOC130995311`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
产物	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha
Arabidopsis	`AT1G20950` (AT1G20950) Phosphofructokinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838689] identity=81.5; qcov=1; evalue=0; confidence=high
Rice	`Os02g0714200` (OsPFPA1) - identity=80.7; qcov=1; evalue=0; confidence=high
GO	GO:0003872 (6-phosphofructokinase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006096 (glycolytic process); GO:0009749 (response to glucose); GO:0015979 (photosynthesis); GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00365 (PFK)
InterPro	-
eggNOG	-
NR	GeneID:130995311

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057776536.1`
2	Cytosol	细胞质基质	1.00000	`XP_057776536.1`
3	Cell projection	细胞突起	0.40000	`XP_057776545.1`
4	Nucleus	细胞核	0.00000	`XP_057776536.1`
5	Chromosome	染色体	0.00000	`XP_057776536.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55396810`	`TA`	`T`	1bp_deletion	frameshift_variant	1	D4
`Chr1:55396810`	`TA`	`T`	1bp_deletion	CDS_variant	1	D4
`Chr1:55396886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,A15
`Chr1:55397005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B37,B77,C62,C73
`Chr1:55397939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,B21
`Chr1:55398175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr1:55398515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:55398637`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C64
`Chr1:55398637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr1:55400575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B79,C39,D1
`Chr1:55400859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:55400891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776536.1

639 aa

320

639

PFK

PF00365 PFK 88-448 aa

XP_057776545.1

610 aa

305

610

PFK

PF00365 PFK 88-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776536.1`	Pfam	`PF00365`	PFK	Domain	88	448	1.8e-26	93.8	Phosphofructokinase
`XP_057776545.1`	Pfam	`PF00365`	PFK	Domain	88	448	1.6e-26	94.0	Phosphofructokinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920562.1
TAAACAAAGGGGCAGCAGCGACTCGGTTGGTAATACCGCCCCTTTTTCGTATATATACAAACGGGAAGAAATTAAGAAGAAGAAAACGAGAGATAGTTTGCAGCTGGTTTTTGAAGTCTGAAGAAATGGACTCCGATTATGGGATAGCAAGAGAACTCTCTGATCTACAGAAGCTCCGGTCGCTCTACGAACCTCAGCTCCCGCCCTGCCTCCAGGGAACTACAGTTCGTGTCGAGTTTGGTGATGCAACCACAGCTGCA...

XM_057920553.1
AAGGGGCAGCAGCGACTCGGTTGGTAATACCGCCCCTTTTTCGTATATATACAAACGGGAAGAAATTAAGAAGAAGAAAACGAGAGATAGTTTGCAGCTGGTTTTTGAAGTCTGAAGAAATGGACTCCGATTATGGGATAGCAAGAGAACTCTCTGATCTACAGAAGCTCCGGTCGCTCTACGAACCTCAGCTCCCGCCCTGCCTCCAGGGAACTACAGTTCGTGTCGAGTTTGGTGATGCAACCACAGCTGCAGATCCC...

CDS

2 records

下载 CDS FASTA

LOC130995311
ATGGACTCCGATTATGGGATAGCAAGAGAACTCTCTGATCTACAGAAGCTCCGGTCGCTCTACGAACCTCAGCTCCCGCCCTGCCTCCAGGGAACTACAGTTCGTGTCGAGTTTGGTGATGCAACCACAGCTGCAGATCCCACTGGTTCTCACACCATTAAAAGGTCTTTTCCTCACACTTATGGTCAACGTTTAGCACACTTCCTCAGAGCTACGGCTAAGGTTCCTGATGCTCAAATAATCACTGATCACCCTGCAGT...

Protein

2 records

下载 Protein FASTA

XP_057776536.1
MDSDYGIARELSDLQKLRSLYEPQLPPCLQGTTVRVEFGDATTAADPTGSHTIKRSFPHTYGQRLAHFLRATAKVPDAQIITDHPAVRVGVVFCGRQSPGGHNVIWGLFEALKVHNPKSVLLGFLGGSEGLFAQKTLEISDEILATYKNQGGYDLLGRTKDQIRTTQQVNATLDACTTLKLDALVIIGGVTSNTDAAQLAETFAERKCPTKVVGIPVTLNGDLKNHFVETNVGFDTICKVNSQLISNVCTDALSAEKYYY...

XP_057776545.1
MDSDYGIARELSDLQKLRSLYEPQLPPCLQGTTVRVEFGDATTAADPTGSHTIKRSFPHTYGQRLAHFLRATAKVPDAQIITDHPAVRVGVVFCGRQSPGGHNVIWGLFEALKVHNPKSVLLGFLGGSEGLFAQKTLEISDEILATYKNQGGYDLLGRTKDQIRTTQQVNATLDACTTLKLDALVIIGGVTSNTDAAQLAETFAERKCPTKVVGIPVTLNGDLKNHFVETNVGFDTICKVNSQLISNVCTDALSAEKYYY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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