当前解析结果
SmilChr07G001618| 统一新 Gene ID | SmilChr07G001618 |
|---|---|
| 名称 | SmilChr07G001618 |
| 描述 | uncharacterized SmilChr07G001618 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 13564622 - 13565894 / + |
| NCBI Gene ID | LOC130995322 |
|---|---|
| GeneID | 130995322 |
| locus_tag | - |
| NCBI Name | LOC130995322 |
| 原始查询 | LOC130995322 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:6240762]; symbol=AT1G27461; hit=AT1G27461; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:6240762]; symbol=AT1G27461; hit=AT1G27461; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G27461 (AT1G27461)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:6240762] identity=40.4; qcov=0.97; evalue=3.38e-66; confidence=medium |
| Rice | Os07g0585700 (SDR4)- identity=35.7; qcov=0.899; evalue=5.6e-43; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF25821 (DUF7950) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995322 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776553.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057776553.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057776553.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057776553.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057776553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:13564687 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A18,B114 |
Chr7:13564687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B114 |
Chr7:13564695 |
T |
TG |
1bp_insertion | frameshift_variant | 29 | A19,A22,A23,A9,B104,B108,B132,B14,B15,B47,B48,B52,B53,B73,B8,B86,B91,B98,B99,C10,C2,C24,C34,C55,C59,C75,C77,C9,D11 |
Chr7:13564722 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B48 |
Chr7:13564722 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B48 |
Chr7:13564724 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | B34 |
Chr7:13564724 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B34 |
Chr7:13564725 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B48 |
Chr7:13564725 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B48 |
Chr7:13564858 |
C |
CTA |
2bp_insertion | frameshift_variant | 8 | A22,B108,B125,B47,C24,C59,C65,C9 |
Chr7:13564862 |
C |
CT |
1bp_insertion | frameshift_variant | 17 | A19,A23,A9,B104,B15,B52,B53,B73,B86,B98,B99,C10,C34,C55,C75,C77,D11 |
Chr7:13564871 |
G |
GA |
1bp_insertion | frameshift_variant | 51 | A10,A11,A13,A18,A21,A7,A8,B100,B102,B108,B109,B110,B114,B123,B124,B126,B128,B133,B16,B17,B18,B29,B30,B37,B40,B42,B43,B49,B68,B76,B79,B85,B97,C13,C28,C33,C36,C41,C46,C47,C49,C52,C64,C66,C7,C76,C82,C84,D10,D3,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776553.1PF25821
DUF7950 242-350 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776553.1 |
Pfam | PF25821 |
DUF7950 | Domain | 242 | 350 | 1.1e-11 | 45.8 | Domain of unknown function (DUF7950) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。