当前解析结果
SmilChr07G001619| 统一新 Gene ID | SmilChr07G001619 |
|---|---|
| 名称 | SmilChr07G001619 |
| 描述 | exocyst complex component EXO70I-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 13597664 - 13599861 / + |
| NCBI Gene ID | LOC130995324 |
|---|---|
| GeneID | 130995324 |
| locus_tag | - |
| NCBI Name | LOC130995324 |
| 原始查询 | LOC130995324 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70I-like |
| 产物 | exocyst complex component EXO70I-like |
| Arabidopsis | AT4G31540 (EXO70G1)exocyst subunit exo70 family protein G1 [Source:NCBI gene (formerly Entrezgene);Acc:829281] identity=29.7; qcov=0.984; evalue=1.33e-72; confidence=low |
| Rice | Os06g0698600 (OsEXO70G2)- identity=29.8; qcov=0.898; evalue=2.33e-58; confidence=low |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995324 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057776554.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057776554.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057776554.1 |
| 4 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057776554.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057776554.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:13597861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr7:13598191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,D3 |
Chr7:13598253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:13598257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,D3 |
Chr7:13598911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr7:13598953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,D7 |
Chr7:13598992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C65,C69 |
Chr7:13598993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr7:13598994 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B39 |
Chr7:13598994 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B39 |
Chr7:13599147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B48,B56,B96,C61 |
Chr7:13599154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776554.1PF20669
Exo70_N 77-195 aa
PF03081
Exo70_C 276-598 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776554.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 77 | 195 | 9.2e-07 | 29.7 | Exocyst complex component Exo70 N-terminal |
XP_057776554.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 276 | 598 | 9.1e-76 | 256.0 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。