当前解析结果
SmilChr07G001629| 统一新 Gene ID | SmilChr07G001629 |
|---|---|
| 名称 | SmilChr07G001629 |
| 描述 | WD repeat-containing protein ATCSA-1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 13652581 - 13658323 / + |
| NCBI Gene ID | LOC130995331 |
|---|---|
| GeneID | 130995331 |
| locus_tag | - |
| NCBI Name | LOC130995331 |
| 原始查询 | LOC130995331 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WD repeat-containing protein ATCSA-1-like |
| 产物 | WD repeat-containing protein ATCSA-1-like |
| Arabidopsis | AT1G27840 (ATCSA-1)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839677] identity=66.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0307200 (OsWD40-42)- identity=61.3; qcov=0.424; evalue=2.98e-81; confidence=low |
| GO | GO:0000109 (nucleotide-excision repair complex); GO:0000209 (protein polyubiquitination); GO:0005515 (protein binding); GO:0006283 (transcription-coupled nucleotide-excision repair); GO:0031464 (Cul4A-RING E3 ubiquitin ligase complex); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process) |
| KEGG | smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995331 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleoplasm | 核质 | 1.00000 | XP_057776561.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057776561.1 |
| 3 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.40000 | XP_057776561.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057776561.1 |
| 5 | Midbody | Midbody | 0.40000 | XP_057776561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:13653970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B138,B31,B84 |
Chr7:13656301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B78,D11 |
Chr7:13656372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B123,D3 |
Chr7:13657344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C53 |
Chr7:13657350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,D11 |
Chr7:13657911 |
CCA |
C |
2bp_deletion | frameshift_variant | 11 | A15,B123,B25,B4,B68,B7,B91,C16,C2,C63,C82 |
Chr7:13657914 |
GT |
G |
1bp_deletion | frameshift_variant | 11 | A15,B123,B25,B4,B68,B7,B91,C16,C2,C63,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776561.1PF00400
WD40 39-72 aa
PF00400
WD40 100-132 aa
PF00400
WD40 183-219 aa
PF00400
WD40 305-336 aa
PF00400
WD40 388-423 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776561.1 |
Pfam | PF00400 |
WD40 | Repeat | 39 | 72 | 1.7e-29 | 101.7 | WD domain, G-beta repeat |
XP_057776561.1 |
Pfam | PF00400 |
WD40 | Repeat | 100 | 132 | 1.7e-29 | 101.7 | WD domain, G-beta repeat |
XP_057776561.1 |
Pfam | PF00400 |
WD40 | Repeat | 183 | 219 | 1.7e-29 | 101.7 | WD domain, G-beta repeat |
XP_057776561.1 |
Pfam | PF00400 |
WD40 | Repeat | 305 | 336 | 1.7e-29 | 101.7 | WD domain, G-beta repeat |
XP_057776561.1 |
Pfam | PF00400 |
WD40 | Repeat | 388 | 423 | 1.7e-29 | 101.7 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。