Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001633`

染色体: Chr07 坐标: 13708680-13716292 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001633`
名称	SmilChr07G001633
描述	serine/threonine-protein phosphatase BSL1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13708680 - 13716292 / `-`

ID 对照

NCBI Gene ID	`LOC130995336`
GeneID	`130995336`
locus_tag	`-`
NCBI Name	`LOC130995336`
原始查询	`LOC130995336`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase BSL1
产物	serine/threonine-protein phosphatase BSL1
Arabidopsis	`AT4G03080` (BSL1) BRI1 suppressor 1 (BSU1)-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:828097] identity=81.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0144400` (OsPPKL2) - identity=77.8; qcov=1.02; evalue=0; confidence=high
GO	GO:0004721 (phosphoprotein phosphatase activity); GO:0005515 (protein binding); GO:0009742 (brassinosteroid mediated signaling pathway)
KEGG	-
Pfam	PF00149 (Metallophos); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24981 (Beta-prop_ATRN-LZTR1)
InterPro	-
eggNOG	-
NR	GeneID:130995336

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057776565.1`
2	Cytosol	细胞质基质	1.00000	`XP_057776566.1`
3	Cytoskeleton	细胞骨架	0.20000	`XP_057776566.1`
4	Nucleus	细胞核	0.20000	`XP_057776568.1`
5	Chromosome	染色体	0.00000	`XP_057776565.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13709118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr7:13709698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:13709710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:13709899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:13710163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:13710830`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C23
`Chr7:13710830`	`TC`	`T`	1bp_deletion	CDS_variant	1	C23
`Chr7:13711074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr7:13712514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr7:13715258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776565.1

881 aa

440

881

Kelch_KLHDC2_KLHL20_DRC7

Beta-prop_ATRN-LZTR1

Metallophos

PF24681 Kelch_KLHDC2_KLHL20_DRC7 21-222 aa PF24981 Beta-prop_ATRN-LZTR1 72-350 aa PF00149 Metallophos 578-785 aa

XP_057776566.1

853 aa

426

853

Kelch_KLHDC2_KLHL20_DRC7

Beta-prop_ATRN-LZTR1

Metallophos

PF24681 Kelch_KLHDC2_KLHL20_DRC7 21-222 aa PF24981 Beta-prop_ATRN-LZTR1 72-350 aa PF00149 Metallophos 550-757 aa

XP_057776568.1

725 aa

362

725

Kelch_KLHDC2_KLHL20_DRC7

Metallophos

PF24681 Kelch_KLHDC2_KLHL20_DRC7 8-198 aa PF00149 Metallophos 422-629 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776565.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	21	222	1e-46	159.7	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057776565.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	72	350	2.2e-24	86.9	Attractin/LZTR1 beta-propeller
`XP_057776565.1`	Pfam	`PF00149`	Metallophos	Domain	578	785	8.6e-40	138.0	Calcineurin-like phosphoesterase
`XP_057776566.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	21	222	1.5e-46	159.2	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057776566.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	72	350	3.3e-30	106.1	Attractin/LZTR1 beta-propeller
`XP_057776566.1`	Pfam	`PF00149`	Metallophos	Domain	550	757	8.1e-40	138.1	Calcineurin-like phosphoesterase
`XP_057776568.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	8	198	3.6e-17	63.1	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057776568.1`	Pfam	`PF00149`	Metallophos	Domain	422	629	6.5e-40	138.4	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920582.1
GCCATTTTCACTCCAACATTTGTAAAATCCAGATATTTTCATCCTACAAAAGAAAATAGAAAAGGAAAAAAATGAAACTTTTTTGAAAAAAGTGTAATAACGGTTGACTCTGGGCGAGTGGGCTTTCTTCATTTCTTGCCAAAAATCTCCCAATTATCAGCTGTCAATCGTAGCTTCATTCATCAATCCATGAAACCCTTTTTCCAATTTCACATTTTTTTTCGGATCAGTAATACAATCCAAATCCATGAATAAAAAAC...

XM_057920583.1
ACAAAAGAAAATAGAAAAGGAAAAAAATGAAACTTTTTTGAAAAAAGTGTAATAACGGTTGACTCTGGGCGAGTGGGCTTTCTTCATTTCTTGCCAAAAATCTCCCAATTATCAGCTGTCAATCGTAGCTTCATTCATCAATCCATGAAACCCTTTTTCCAATTTCACATTTTTTTTCGGATCAGTAATACAATCCAAATCCATGAATAAAAAACCGTTTTATTTTGTTCGAAAAATTGAACTAGAATTATCTGGCAACC...

CDS

3 records

下载 CDS FASTA

LOC130995336
ATGGGATCCAAGCCGTGGCTGTATCCGGCGCCGGAATATCGATATTTGGAGAGCTATTGGGACACTGATGAGGACGCGCCGGGTCCTCGCTGTGGCCACACCCTCACCGCCGTCGCGGCTACGAAAACCCACGGTCCCCGCCTCATTTTGTTCGGAGGCGCCACCGCCATTGGCGGTGGCAACGGTGGTGCCCCTGGCATTCGGTTGGATGGAGTGACAAATTCTGTTCATTCTTACGATGTACTTACTAGAAAATGGAC...

Protein

3 records

下载 Protein FASTA

XP_057776565.1
MGSKPWLYPAPEYRYLESYWDTDEDAPGPRCGHTLTAVAATKTHGPRLILFGGATAIGGGNGGAPGIRLDGVTNSVHSYDVLTRKWTRLRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGTPLADAYGLLMHRNGLWEWTLAPGVSPSPRYQ...

XP_057776566.1
MGSKPWLYPAPEYRYLESYWDTDEDAPGPRCGHTLTAVAATKTHGPRLILFGGATAIGGGNGGAPGIRLDGVTNSVHSYDVLTRKWTRLRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGTPLADAYGLLMHRNGLWEWTLAPGVSPSPRYQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器