Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003706`

染色体: Chr01 坐标: 55417851-55420324 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003706`
名称	SmilChr01G003706
描述	chlorophyll a-b binding protein 7, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55417851 - 55420324 / `+`

ID 对照

NCBI Gene ID	`LOC130995349`
GeneID	`130995349`
locus_tag	`-`
NCBI Name	`LOC130995349`
原始查询	`LOC130995349`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chlorophyll a-b binding protein 7, chloroplastic
产物	chlorophyll a-b binding protein 7%2C chloroplastic
Arabidopsis	`AT1G76570` (AT1G76570) Chlorophyll A-B binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:843990] identity=63.9; qcov=1.08; evalue=4.5e-131; confidence=high
Rice	`Os09g0296800` (CabE) - identity=55.2; qcov=1.19; evalue=8.59e-116; confidence=high
GO	GO:0009416 (response to light stimulus); GO:0009768 (photosynthesis, light harvesting in photosystem I); GO:0016020 (membrane)
KEGG	smil00196 (Photosynthesis - antenna proteins - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00504 (Chloroa_b-bind)
InterPro	-
eggNOG	-
NR	GeneID:130995349

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776588.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057776588.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057776588.1`
4	Nucleus	细胞核	0.00000	`XP_057776588.1`
5	Chromosome	染色体	0.00000	`XP_057776588.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55418064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:55418248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,D11,D4
`Chr1:55418805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B102,B39,C13,C6
`Chr1:55418817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr1:55419218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B124,B137,C61,C78
`Chr1:55420242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B55
`Chr1:55420243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,C74,C8
`Chr1:55420249`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	D5
`Chr1:55420249`	`AAG`	`A`	2bp_deletion	CDS_variant	1	D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776588.1

323 aa

162

323

Chloroa_b-bind

PF00504 Chloroa_b-bind 113-293 aa

XP_057776592.1

318 aa

159

318

Chloroa_b-bind

PF00504 Chloroa_b-bind 113-288 aa

XP_057776602.1

274 aa

137

274

Chloroa_b-bind

PF00504 Chloroa_b-bind 87-244 aa

XP_057776610.1

269 aa

134

269

Chloroa_b-bind

PF00504 Chloroa_b-bind 87-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776588.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	113	293	1.4e-39	136.9	Chlorophyll A-B binding protein
`XP_057776592.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	113	288	6.4e-41	141.3	Chlorophyll A-B binding protein
`XP_057776602.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	87	244	4.4e-29	102.8	Chlorophyll A-B binding protein
`XP_057776610.1`	Pfam	`PF00504`	Chloroa_b-bind	Family	87	239	2e-30	107.2	Chlorophyll A-B binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057920605.1
CAAAAAGAAAATTGAGAAAAGAAAATCGAAAATAGAAAATAGAAAATAAAAAATAAAGAAATGGAGGAAAAGAAAAAAGGGAAGACAAAACTAGTGGCTGAGGAGAACTAACCATCGAGATCAAAAAATCCATTAAACGGCTAACTGCTGCAAATTCCTCCCGGGAGGCTTGACTGGAGCCGTCGTAGCCATGTCTCTGCTCCGCCCTCCGCCGCCGCTCCTCCGCTGCGAACGCGCGGCTCTAACTTTTTCGAGCTTCC...

XM_057920609.1
CAAAAAGAAAATTGAGAAAAGAAAATCGAAAATAGAAAATAGAAAATAAAAAATAAAGAAATGGAGGAAAAGAAAAAAGGGAAGACAAAACTAGTGGCTGAGGAGAACTAACCATCGAGATCAAAAAATCCATTAAACGGCTAACTGCTGCAAATTCCTCCCGGGAGGCTTGACTGGAGCCGTCGTAGCCATGTCTCTGCTCCGCCCTCCGCCGCCGCTCCTCCGCTGCGAACGCGCGGCTCTAACTTTTTCGAGCTTCC...

CDS

4 records

下载 CDS FASTA

LOC130995349
ATGTCTCTGCTCCGCCCTCCGCCGCCGCTCCTCCGCTGCGAACGCGCGGCTCTAACTTTTTCGAGCTTCCACGGTATCAACTCATTCTCCCGCTTTAAAGCTTCATGGCAAGAGGTTGCCGGAGTCGTTGTGTTCTCCGCGATTCCTTTCACGGCGGTGAAAGCGATTGCCAACAGCCCGGTCGGGGAGGAGCTCCAGAGGCGAATGGAGGAGAAGAAGAAGCTCTTTAAGGACAACGCTTCGAAGCTGAAGGCGCTCTC...

Protein

4 records

下载 Protein FASTA

XP_057776588.1
MSLLRPPPPLLRCERAALTFSSFHGINSFSRFKASWQEVAGVVVFSAIPFTAVKAIANSPVGEELQRRMEEKKKLFKDNASKLKALSNKARMESVWYGEDRPRWLGPISYEYPTYLTGELPGDYGFDIAGLSQDPVALQRYFNFEVLHARWAMLAALGALIPEILDLIGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVLIIAICQALLMAFQAQVGPEYARFCGIEALEPLGIYLPGDINYPGGALFDPLN...

XP_057776592.1
MSLLRPPPPLLRCERAALTFSSFHGINSFSRFKASWQEVAGVVVFSAIPFTAVKAIANSPVGEELQRRMEEKKKLFKDNASKLKALSNKARMESVWYGEDRPRWLGPISYEYPTYLTGELPGDYGFDIAGLSQDPVALQRYFNFEVLHARWAMLAALGALIPEILDLIGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVLIIAICQALLMVGPEYARFCGIEALEPLGIYLPGDINYPGGALFDPLNLSQDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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