Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001657`

染色体: Chr07 坐标: 14017021-14021701 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001657`
名称	SmilChr07G001657
描述	LEC14B protein-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14017021 - 14021701 / `+`

ID 对照

NCBI Gene ID	`LOC130995359`
GeneID	`130995359`
locus_tag	`-`
NCBI Name	`LOC130995359`
原始查询	`LOC130995359`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEC14B protein-like
产物	LEC14B protein-like
Arabidopsis	`AT4G03020` (AT4G03020) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828111] identity=66.8; qcov=0.932; evalue=0; confidence=high
Rice	`Os05g0407200` (OsWD40-119) - identity=59.2; qcov=0.891; evalue=1.37e-159; confidence=high
GO	GO:0005515 (protein binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:130995359

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776590.1`
2	Cytoplasm	细胞质	1.00000	`XP_057776596.1`
3	Chromosome	染色体	0.00000	`XP_057776590.1`
4	Centromere	着丝粒	0.00000	`XP_057776590.1`
5	Chromatin	染色质	0.00000	`XP_057776590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14017966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:14018334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B81,C15,C31
`Chr7:14018378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B133,B16,C60,D10
`Chr7:14018405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B35,C15
`Chr7:14018987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr7:14019654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:14019939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B121,B26,C45,C83
`Chr7:14019964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:14021297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,C69
`Chr7:14021366`	`T`	`TA`	1bp_insertion	frameshift_variant	2	B15,B57
`Chr7:14021366`	`T`	`TA`	1bp_insertion	CDS_variant	2	B15,B57
`Chr7:14021368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776590.1

519 aa

260

519

WD40

PF00400 WD40 243-272 aa PF00400 WD40 281-315 aa PF00400 WD40 323-361 aa PF00400 WD40 401-443 aa PF00400 WD40 448-484 aa

XP_057776591.1

519 aa

260

519

WD40

PF00400 WD40 243-272 aa PF00400 WD40 281-315 aa PF00400 WD40 323-361 aa PF00400 WD40 401-443 aa PF00400 WD40 448-484 aa

XP_057776593.1

500 aa

250

500

WD40

PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

XP_057776594.1

500 aa

250

500

WD40

PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

XP_057776595.1

500 aa

250

500

WD40

PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

XP_057776596.1

440 aa

220

440

WD40

PF00400 WD40 243-272 aa PF00400 WD40 281-315 aa PF00400 WD40 323-361 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776590.1`	Pfam	`PF00400`	WD40	Repeat	243	272	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776590.1`	Pfam	`PF00400`	WD40	Repeat	281	315	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776590.1`	Pfam	`PF00400`	WD40	Repeat	323	361	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776590.1`	Pfam	`PF00400`	WD40	Repeat	401	443	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776590.1`	Pfam	`PF00400`	WD40	Repeat	448	484	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776591.1`	Pfam	`PF00400`	WD40	Repeat	243	272	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776591.1`	Pfam	`PF00400`	WD40	Repeat	281	315	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776591.1`	Pfam	`PF00400`	WD40	Repeat	323	361	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776591.1`	Pfam	`PF00400`	WD40	Repeat	401	443	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776591.1`	Pfam	`PF00400`	WD40	Repeat	448	484	2.3e-32	110.8	WD domain, G-beta repeat
`XP_057776593.1`	Pfam	`PF00400`	WD40	Repeat	224	253	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776593.1`	Pfam	`PF00400`	WD40	Repeat	262	296	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776593.1`	Pfam	`PF00400`	WD40	Repeat	304	342	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776593.1`	Pfam	`PF00400`	WD40	Repeat	382	424	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776593.1`	Pfam	`PF00400`	WD40	Repeat	429	465	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776594.1`	Pfam	`PF00400`	WD40	Repeat	224	253	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776594.1`	Pfam	`PF00400`	WD40	Repeat	262	296	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776594.1`	Pfam	`PF00400`	WD40	Repeat	304	342	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776594.1`	Pfam	`PF00400`	WD40	Repeat	382	424	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776594.1`	Pfam	`PF00400`	WD40	Repeat	429	465	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776595.1`	Pfam	`PF00400`	WD40	Repeat	224	253	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776595.1`	Pfam	`PF00400`	WD40	Repeat	262	296	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776595.1`	Pfam	`PF00400`	WD40	Repeat	304	342	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776595.1`	Pfam	`PF00400`	WD40	Repeat	382	424	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776595.1`	Pfam	`PF00400`	WD40	Repeat	429	465	1.7e-32	111.1	WD domain, G-beta repeat
`XP_057776596.1`	Pfam	`PF00400`	WD40	Repeat	243	272	3e-21	75.6	WD domain, G-beta repeat
`XP_057776596.1`	Pfam	`PF00400`	WD40	Repeat	281	315	3e-21	75.6	WD domain, G-beta repeat
`XP_057776596.1`	Pfam	`PF00400`	WD40	Repeat	323	361	3e-21	75.6	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057920607.1
ATTATTTTTCTCATTCCCCCAAAATTTAGAAATCCTATTATAGAAAAATGAATTCTTCTGCCGTCACCAGCCAAGAGTATCTAAGTACGTGGTTTAGTGAGACAGTTTAAAAAAGTCAAATATTTCTTGTTCCTCTTCCCCTTCATCTTTATATTTTCTGTTTGAGATAGTACACCATTTTTCTTATATATCGTGAAATGATGAGGATTCTTGATTTTCTGGGATGTTTTAATTTTAGGCAGTTCTTCTTGAGGCAGCTG...

XM_057920608.1
CCCAAAATTTAGAAATCCTATTATAGAAAAATGAATTCTTCTGCCGTCACCAGCCAAGAGTATCTAAGCAGTTCTTCTTGAGGCAGCTGTAAGAAATCAAACACAGATGTTATCCATTATGCAAGATTTCATTTTTTATGAACATGTAACGCCGGTCGTCACAATGTTGTCTGTACCTGAAGATGCAGACACTGATAGCATGATAGGCTATAGATTTAGTAAAATGGAGATTGAATCTGAGCTCTCTGATGGCTCAAGTG...

CDS

6 records

下载 CDS FASTA

LOC130995359
ATGTTATCCATTATGCAAGATTTCATTTTTTATGAACATGTAACGCCGGTCGTCACAATGTTGTCTGTACCTGAAGATGCAGACACTGATAGCATGATAGGCTATAGATTTAGTAAAATGGAGATTGAATCTGAGCTCTCTGATGGCTCAAGTGATGATGGTGGTGGCAGTTCTTGGCCTAGTCAAAAGCCAGATTCATTAGATCAAGATATAGCTCAGCTAACGAAGCTTCAGTCGAGGCCAAATGAGCATTTCAGCAG...

Protein

6 records

下载 Protein FASTA

XP_057776590.1
MLSIMQDFIFYEHVTPVVTMLSVPEDADTDSMIGYRFSKMEIESELSDGSSDDGGGSSWPSQKPDSLDQDIAQLTKLQSRPNEHFSSVSPRKHDFPISTLKMLAGREANLSGRGRFSLADCRHVLSRYLPVYGPCIVDQMSTRAYVSQFSADGSLLIAAFQGSQIRIYDVEKGWKVRKNILARSLRWTITDTSLSPDQQWLVYASMSPVIQIVDAGSDTCESLANITEVHDGLDLSSHDDGGYSFGIFSLQFSTDGQEVV...

XP_057776591.1
MLSIMQDFIFYEHVTPVVTMLSVPEDADTDSMIGYRFSKMEIESELSDGSSDDGGGSSWPSQKPDSLDQDIAQLTKLQSRPNEHFSSVSPRKHDFPISTLKMLAGREANLSGRGRFSLADCRHVLSRYLPVYGPCIVDQMSTRAYVSQFSADGSLLIAAFQGSQIRIYDVEKGWKVRKNILARSLRWTITDTSLSPDQQWLVYASMSPVIQIVDAGSDTCESLANITEVHDGLDLSSHDDGGYSFGIFSLQFSTDGQEVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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