Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001689`

染色体: Chr07 坐标: 14307727-14315705 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001689`
名称	SmilChr07G001689
描述	putative GTP diphosphokinase RSH1, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14307727 - 14315705 / `+`

ID 对照

NCBI Gene ID	`LOC130995385`
GeneID	`130995385`
locus_tag	`-`
NCBI Name	`LOC130995385`
原始查询	`LOC130995385`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative GTP diphosphokinase RSH1, chloroplastic
产物	putative GTP diphosphokinase RSH1%2C chloroplastic
Arabidopsis	`AT4G02260` (RSH1) RELA/SPOT homolog 1 [Source:NCBI gene (formerly Entrezgene);Acc:828096] identity=69; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0340900` (RSH1) - identity=66.1; qcov=0.984; evalue=0; confidence=high
GO	GO:0015969 (guanosine tetraphosphate metabolic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01966 (HD); PF02824 (TGS); PF04607 (RelA_SpoT); PF13328 (HD_4)
InterPro	-
eggNOG	-
NR	GeneID:130995385

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776635.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057776635.1`
3	Nucleus	细胞核	0.00000	`XP_057776635.1`
4	Chromosome	染色体	0.00000	`XP_057776635.1`
5	Centromere	着丝粒	0.00000	`XP_057776635.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14309043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B104,B73,D10
`Chr7:14312706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B48,B56,B96,C61
`Chr7:14313422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:14313423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr7:14313469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:14314448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B48,B56,B96,C61
`Chr7:14314768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B106,B26,B36,C45
`Chr7:14314825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:14314832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr7:14315187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:14315328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:14315373`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	A18,B109,B114,B59,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776635.1

925 aa

462

925

HD_4

RelA_SpoT

TGS

PF13328 HD_4 146-303 aa PF01966 HD 166-272 aa PF04607 RelA_SpoT 372-488 aa PF02824 TGS 559-618 aa

XP_057776636.1

880 aa

440

880

HD_4

RelA_SpoT

TGS

PF13328 HD_4 146-303 aa PF01966 HD 166-272 aa PF04607 RelA_SpoT 372-488 aa PF02824 TGS 559-618 aa

XP_057776637.1

879 aa

440

879

HD_4

RelA_SpoT

TGS

PF13328 HD_4 146-303 aa PF01966 HD 166-272 aa PF04607 RelA_SpoT 372-488 aa PF02824 TGS 559-618 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776635.1`	Pfam	`PF13328`	HD_4	Family	146	303	1.1e-44	152.7	HD domain
`XP_057776635.1`	Pfam	`PF01966`	HD	Family	166	272	7.1e-12	46.3	HD domain
`XP_057776635.1`	Pfam	`PF04607`	RelA_SpoT	Family	372	488	7.3e-26	91.4	Region found in RelA / SpoT proteins
`XP_057776635.1`	Pfam	`PF02824`	TGS	Domain	559	618	4e-20	72.3	TGS domain
`XP_057776636.1`	Pfam	`PF13328`	HD_4	Family	146	303	9.9e-45	152.8	HD domain
`XP_057776636.1`	Pfam	`PF01966`	HD	Family	166	272	6.3e-12	46.5	HD domain
`XP_057776636.1`	Pfam	`PF04607`	RelA_SpoT	Family	372	488	6.6e-26	91.5	Region found in RelA / SpoT proteins
`XP_057776636.1`	Pfam	`PF02824`	TGS	Domain	559	618	3.7e-20	72.4	TGS domain
`XP_057776637.1`	Pfam	`PF13328`	HD_4	Family	146	303	9.8e-45	152.8	HD domain
`XP_057776637.1`	Pfam	`PF01966`	HD	Family	166	272	6.3e-12	46.5	HD domain
`XP_057776637.1`	Pfam	`PF04607`	RelA_SpoT	Family	372	488	6.6e-26	91.5	Region found in RelA / SpoT proteins
`XP_057776637.1`	Pfam	`PF02824`	TGS	Domain	559	618	3.7e-20	72.4	TGS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920652.1
AATCACGATAGAAATCCTAATGGGGGAAAAAAATTGAAGACAAATTATCTTTTATCATACGGCATTTGTGTGGCCTCGACTAAAACTCCATTCTATCCCCCTCCCTCTCTCCTCTTCGCTCTTTCTCTCTCTTGATTATCTGACTATTTTCTTCACTACCTTATTTCCATCTAAATCCTCTCTAACTCTTTCTTAATTTGGAGAATTTGCTAGGTTTTTGGAAGGGGAATACTATTTTTTGTGTGTGTCTGTGCTGATGA...

XM_057920653.1
AATCACGATAGAAATCCTAATGGGGGAAAAAAATTGAAGACAAATTATCTTTTATCATACGGCATTTGTGTGGCCTCGACTAAAACTCCATTCTATCCCCCTCCCTCTCTCCTCTTCGCTCTTTCTCTCTCTTGATTATCTGACTATTTTCTTCACTACCTTATTTCCATCTAAATCCTCTCTAACTCTTTCTTAATTTGGAGAATTTGCTAGGTTTTTGGAAGGGGAATACTATTTTTTGTGTGTGTCTGTGCTGATGA...

CDS

3 records

下载 CDS FASTA

LOC130995385
ATGATATCGCCTTCTTCAATGTCAGTTTCTATCGAATGTGTGAATATATGCAAGTTGTGGAAGGGGGACGTGGCTGGAAGATTTGATTGCAGCATGTTATCGTGTGCTTCAAAAGCTCCGAGGGTGCTGACTGGATTTCTTGCTAGCACTGCGCATCCTCCTCAGGCTTGTGGAAGAACTGTGAGAAGAAATAGCATCCGATGTAGATGCGAAGTTCATAACTGGGGAGAATGGTGCTTATATGAGACCTCCAGTCTTTC...

Protein

3 records

下载 Protein FASTA

XP_057776635.1
MISPSSMSVSIECVNICKLWKGDVAGRFDCSMLSCASKAPRVLTGFLASTAHPPQACGRTVRRNSIRCRCEVHNWGEWCLYETSSLSSLQKLDEASTRHSVRNKWKLHCSPSSSERYEVSPDSLWEDLKPVISYLSPKELGLVRKALNLAFEAHDGQRRRSGEPFIIHPVAVAQILGELELDWESIAAGLLHDTVEDTNVVTFESIEKAFGATVRHIVEGETKVSKLGKLKSKNENLSVQDVKADDLRQMFLAMTEEVRV...

XP_057776636.1
MISPSSMSVSIECVNICKLWKGDVAGRFDCSMLSCASKAPRVLTGFLASTAHPPQACGRTVRRNSIRCRCEVHNWGEWCLYETSSLSSLQKLDEASTRHSVRNKWKLHCSPSSSERYEVSPDSLWEDLKPVISYLSPKELGLVRKALNLAFEAHDGQRRRSGEPFIIHPVAVAQILGELELDWESIAAGLLHDTVEDTNVVTFESIEKAFGATVRHIVEGETKVSKLGKLKSKNENLSVQDVKADDLRQMFLAMTEEVRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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