Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001704`

染色体: Chr07 坐标: 14449617-14453353 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001704`
名称	SmilChr07G001704
描述	protein FAR1-RELATED SEQUENCE 11-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14449617 - 14453353 / `-`

ID 对照

NCBI Gene ID	`LOC130995396`
GeneID	`130995396`
locus_tag	`-`
NCBI Name	`LOC130995396`
原始查询	`LOC130995396`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 11-like
产物	protein FAR1-RELATED SEQUENCE 11-like
Arabidopsis	`AT1G10240` (FRS11) FAR1-related sequence 11 [Source:NCBI gene (formerly Entrezgene);Acc:837563] identity=57.3; qcov=0.861; evalue=0; confidence=high
Rice	`Os04g0443000` - identity=52.1; qcov=0.857; evalue=0; confidence=high
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like); PF26175 (HTH_FAR1)
InterPro	-
eggNOG	-
NR	GeneID:130995396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776650.1`
2	Chromosome	染色体	0.00000	`XP_057776650.1`
3	Centromere	着丝粒	0.00000	`XP_057776650.1`
4	Chromatin	染色质	0.00000	`XP_057776650.1`
5	Telomere	端粒	0.00000	`XP_057776650.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14450439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B128,C50
`Chr7:14450939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:14450971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr7:14451034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:14451480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:14451618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:14451699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B36,C38,C39,C86
`Chr7:14451700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B36,C38,C39,C86
`Chr7:14451803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:14452118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776650.1

750 aa

375

750

FAR1

HTH_FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 59-152 aa PF26175 HTH_FAR1 168-219 aa PF21056 ZSWIM1-3_RNaseH-like 245-356 aa PF10551 MULE 274-367 aa PF04434 SWIM 557-584 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776650.1`	Pfam	`PF03101`	FAR1	Domain	59	152	1.3e-18	68.2	FAR1 DNA-binding domain
`XP_057776650.1`	Pfam	`PF26175`	HTH_FAR1	Domain	168	219	2.8e-22	79.0	FAR1 HTH-like domain
`XP_057776650.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	245	356	7e-07	29.9	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057776650.1`	Pfam	`PF10551`	MULE	Domain	274	367	7.7e-18	65.4	MULE transposase domain
`XP_057776650.1`	Pfam	`PF04434`	SWIM	Domain	557	584	1.4e-08	34.8	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920667.1
ACAAACACACGAAGTATGTCGTCCATAAACAATTTGGGCCTGAAAGAAAAAAATAGCATAACCTGTTGCCCACCGCATTACACCAAACATAATCCTACGGTGTCGTAGAGCTTGCTGAATCACGGCCGTTGGATATCATGCACCAGTGATGGTCCCACCTGATGTCAATCTCCAATCGGACGGCAGATATTTGGCACTCATGCGCACGATAACCCCCTCCCACCGTTCGGCGCACGATAGTTCACCCGCGCCACTGACGA...

CDS

1 records

下载 CDS FASTA

LOC130995396
ATGACTGAGCAAACTGATATACTAAATGAAACATCTGAGAATGGATCAGATTCATCTCGAGATGACAATGGCACTATAGAGGAAATGCCAGAAGACACCATCTTGTCACGACAAACGTCGGTGAATCTCGTGCCTTTCATTGGACAGAGATTTGTATCACAGGATGCTGCCTATGAATTCTACTGTAGCTTTGCTAAGCAATGTGGCTTTTCAATTAGGCGCCACCGGACTCGTGGGAAAGATGGCGTGGGTAGAGGTAT...

Protein

1 records

下载 Protein FASTA

XP_057776650.1
MTEQTDILNETSENGSDSSRDDNGTIEEMPEDTILSRQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGITRRDFTCHRGGYPQLKPSADGKIQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFSNVHNHELLKFNEVQLLPAYCTMTPDDKSRICMYAKAGMSVRQMLRLMELEKGIKLGCLPFSEVDVRNLLQSFRNVERDHDPIDLLKMCKEKKDRDPSFKYNYRIDANNRLEHIAWS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器