Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001703`

染色体: Chr07 坐标: 14441755-14446014 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001703`
名称	SmilChr07G001703
描述	importin subunit alpha-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14441755 - 14446014 / `-`

ID 对照

NCBI Gene ID	`LOC130995398`
GeneID	`130995398`
locus_tag	`-`
NCBI Name	`LOC130995398`
原始查询	`LOC130995398`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	importin subunit alpha-like
产物	importin subunit alpha-like
Arabidopsis	`AT3G06720` (IMPA-1) importin alpha isoform 1 [Source:NCBI gene (formerly Entrezgene);Acc:819857] identity=80.2; qcov=1; evalue=0; confidence=high
Rice	`Os05g0155601` (Imp3) - identity=79.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006607 (NLS-bearing protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00514 (Arm); PF01749 (IBB); PF02985 (HEAT); PF13513 (HEAT_EZ); PF13646 (HEAT_2); PF16186 (Arm_3)
InterPro	-
eggNOG	-
NR	GeneID:130995398

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776651.1`
2	Cytoplasm	细胞质	1.00000	`XP_057776651.1`
3	Cytosol	细胞质基质	1.00000	`XP_057776651.1`
4	Nucleoplasm	核质	0.40000	`XP_057776651.1`
5	Nucleus membrane	核膜	0.20000	`XP_057776651.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14442427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C71
`Chr7:14442492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:14442498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C71
`Chr7:14442865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr7:14443936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:14443951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B15,C10,C30
`Chr7:14444216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:14444255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B4,C35
`Chr7:14444760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B72,C15,C32,C68,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776651.1

529 aa

264

529

IBB

Arm

HEAT_2

HEAT_EZ

Arm

HEAT

Arm

Arm_3

PF01749 IBB 12-94 aa PF00514 Arm 105-145 aa PF13646 HEAT_2 118-191 aa PF13513 HEAT_EZ 130-185 aa PF00514 Arm 147-186 aa PF02985 HEAT 160-186 aa PF00514 Arm 189-230 aa PF00514 Arm 243-271 aa PF00514 Arm 274-312 aa PF00514 Arm 316-356 aa PF00514 Arm 358-397 aa PF00514 Arm 402-440 aa PF16186 Arm_3 456-500 aa

XP_057776652.1

529 aa

264

529

IBB

Arm

HEAT_2

HEAT_EZ

Arm

HEAT

Arm

Arm_3

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776651.1`	Pfam	`PF01749`	IBB	Repeat	12	94	2.7e-24	86.2	Importin beta binding domain
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	105	145	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF13646`	HEAT_2	Repeat	118	191	1.8e-20	73.7	HEAT repeats
`XP_057776651.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	130	185	7.2e-25	87.7	HEAT-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	147	186	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF02985`	HEAT	Repeat	160	186	2e-16	59.2	HEAT repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	189	230	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	243	271	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	274	312	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	316	356	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	358	397	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF00514`	Arm	Repeat	402	440	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776651.1`	Pfam	`PF16186`	Arm_3	Repeat	456	500	2.1e-20	72.8	Atypical Arm repeat
`XP_057776652.1`	Pfam	`PF01749`	IBB	Repeat	12	94	2.7e-24	86.2	Importin beta binding domain
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	105	145	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF13646`	HEAT_2	Repeat	118	191	1.8e-20	73.7	HEAT repeats
`XP_057776652.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	130	185	7.2e-25	87.7	HEAT-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	147	186	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF02985`	HEAT	Repeat	160	186	2e-16	59.2	HEAT repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	189	230	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	243	271	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	274	312	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	316	356	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	358	397	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF00514`	Arm	Repeat	402	440	1e-93	305.4	Armadillo/beta-catenin-like repeat
`XP_057776652.1`	Pfam	`PF16186`	Arm_3	Repeat	456	500	2.1e-20	72.8	Atypical Arm repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920668.1
TTAATCCGATATAATTGAGTCAATTCAAGTTCAAGTGAATTGATCCGACTAAACACACAATACTCCATTTTTGGAGTTTTCCTTTTCCCTAAAACAAATGGGGAAAAGAATTCAAACTCCGTGGCACAAGCGTTAATAATCACACAAACAAGCCCAGGTTTGTATATATAAAAAAGTAGGCACCGCTGTTCTCTGGTGTGATCATCGGCCTCCATTTCCTCACCAAAAATCATCTCTACTCTCACACTGCCGCTCCAAAA...

XM_057920669.1
CCGATATAATTGAGTCAATTCAAGTTCAAGTGAATTGATCCGACTAAACACACAATACTCCATTTTTGGAGTTTTCCTTTTCCCTAAAACAAATGGGGAAAAGAATTCAAACTCCGTGGCACAAGCGTTAATAATCACACAAACAAGCCCAGGTTTGTATATATAAAAAAGTAGGCACCGCTGTTCTCTGGTGTGATCATCGGCCTCCATTTCCTCACCAAAAATCATCTCTACTCTCACACTGCCGCTCCAAAATCTCC...

CDS

2 records

下载 CDS FASTA

LOC130995398
ATGTCGTTGAGGCCGAACGCGAGGACGGAGGTCCGCCGGAACCGGTACAAGGTGGTGGTGGACGCCGAGGAAGGCCGCCGCCGGCGAGAGGATAACATGGTGGAGATCCGGAAGAATAAGAGGGAGGAGAACTTGCAGAAGAAGCGGCGCGAGGGGCTTCCACCGCCTCAATCCCAACCCGCAGTCAGTGTTCCGCAGCTCGATAAGAAGTTGGAAAGCCTCCCAGCAATGATTGCTGGGATTTGGTCAAATGATGCTGC...

Protein

2 records

下载 Protein FASTA

XP_057776651.1
MSLRPNARTEVRRNRYKVVVDAEEGRRRREDNMVEIRKNKREENLQKKRREGLPPPQSQPAVSVPQLDKKLESLPAMIAGIWSNDAALQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDHNAVPIFVRLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSYGALAPLLAQFSDQAKLSMLRNATWTLSNFCRGKPQPQFEQVKPALPALTHLIHTTDEEVLT...

XP_057776652.1
MSLRPNARTEVRRNRYKVVVDAEEGRRRREDNMVEIRKNKREENLQKKRREGLPPPQSQPAVSVPQLDKKLESLPAMIAGIWSNDAALQLEATTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDHNAVPIFVRLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSYGALAPLLAQFSDQAKLSMLRNATWTLSNFCRGKPQPQFEQVKPALPALTHLIHTTDEEVLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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