当前解析结果
SmilChr07G001714| 统一新 Gene ID | SmilChr07G001714 |
|---|---|
| 名称 | SmilChr07G001714 |
| 描述 | lon protease homolog 1, mitochondrial-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14551315 - 14562767 / - |
| NCBI Gene ID | LOC130995406 |
|---|---|
| GeneID | 130995406 |
| locus_tag | - |
| NCBI Name | LOC130995406 |
| 原始查询 | LOC130995406 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lon protease homolog 1, mitochondrial-like |
| 产物 | lon protease homolog 1%2C mitochondrial-like |
| Arabidopsis | AT5G26860 (LON1)lon protease 1 [Source:NCBI gene (formerly Entrezgene);Acc:832744] identity=76.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0689300 (OsLonP3)- identity=70.8; qcov=0.493; evalue=0; confidence=medium |
| GO | GO:0003697 (single-stranded DNA binding); GO:0004176 (ATP-dependent peptidase activity); GO:0004252 (serine-type endopeptidase activity); GO:0005524 (ATP binding); GO:0005759 (mitochondrial matrix); GO:0006515 (protein quality control for misfolded or incompletely synthesized proteins); GO:0007005 (mitochondrion organization); GO:0016887 (ATP hydrolysis activity); GO:0030163 (protein catabolic process); GO:0051131 (chaperone-mediated protein complex assembly) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF02190 (LON_substr_bdg); PF05362 (Lon_C); PF07728 (AAA_5); PF22667 (Lon_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995406 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057776659.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057776659.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057776659.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776659.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776659.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14551600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,B75 |
Chr7:14552079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,C41,C80,C82 |
Chr7:14552109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C70 |
Chr7:14552488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,C41,C80,C82 |
Chr7:14553472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:14553578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:14561318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:14562334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:14562465 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | B38 |
Chr7:14562465 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | B38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776659.1PF02190
LON_substr_bdg 95-299 aa
PF07728
AAA_5 452-529 aa
PF00004
AAA 452-589 aa
PF22667
Lon_lid 613-663 aa
PF05362
Lon_C 737-941 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776659.1 |
Pfam | PF02190 |
LON_substr_bdg | Family | 95 | 299 | 3.1e-35 | 122.6 | ATP-dependent protease La (LON) substrate-binding domain |
XP_057776659.1 |
Pfam | PF07728 |
AAA_5 | Domain | 452 | 529 | 4.7e-05 | 24.1 | AAA domain (dynein-related subfamily) |
XP_057776659.1 |
Pfam | PF00004 |
AAA | Domain | 452 | 589 | 4e-23 | 83.0 | ATPase family associated with various cellular activities (AAA) |
XP_057776659.1 |
Pfam | PF22667 |
Lon_lid | Domain | 613 | 663 | 9.4e-20 | 70.7 | Lon protease AAA+ ATPase lid domain |
XP_057776659.1 |
Pfam | PF05362 |
Lon_C | Domain | 737 | 941 | 2.1e-75 | 253.5 | Lon protease (S16) C-terminal proteolytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。