Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001720

染色体: Chr07 坐标: 14620812-14623833 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001720
名称SmilChr07G001720
描述uncharacterized SmilChr07G001720
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向14620812 - 14623833 / -

ID 对照

NCBI Gene IDLOC130995410
GeneID130995410
locus_tag-
NCBI NameLOC130995410
原始查询LOC130995410

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high
产物Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high
ArabidopsisAT4G02100 (AT4G02100)
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]
identity=62.7; qcov=1.04; evalue=0; confidence=high
RiceOs03g0304500
-
identity=50.4; qcov=0.947; evalue=5.42e-151; confidence=high
GOGO:0005515 (protein binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130995410

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057776664.1
2 Nucleus 细胞核 0.40000 XP_057776664.1
3 Cytosol 细胞质基质 0.40000 XP_057776664.1
4 Chromosome 染色体 0.00000 XP_057776664.1
5 Centromere 着丝粒 0.00000 XP_057776664.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:14621079 C T EMS_canonical_SNV CDS_variant 3 A18,A6,B61
Chr7:14621457 G A EMS_canonical_SNV CDS_variant 1 B7
Chr7:14621510 G A EMS_canonical_SNV stop_gained 26 A15,A16,A21,A5,B108,B121,B128,B136,B20,B23,B49,B56,B64,B65,B83,B96,C19,C37,C42,C48,C49,C62,C79,C8,C84,D3
Chr7:14621568 C T EMS_canonical_SNV CDS_variant 5 A16,B106,B26,B53,C45
Chr7:14621588 G A EMS_canonical_SNV CDS_variant 3 B103,B77,B78
Chr7:14621658 C T EMS_canonical_SNV CDS_variant 2 B38,B39
Chr7:14621685 C T EMS_canonical_SNV CDS_variant 3 A18,A6,B61
Chr7:14621739 G A EMS_canonical_SNV CDS_variant 5 B130,B18,B23,B47,C54
Chr7:14621809 G A EMS_canonical_SNV CDS_variant 1 C5
Chr7:14621823 C T EMS_canonical_SNV CDS_variant 1 B2
Chr7:14621911 G A EMS_canonical_SNV CDS_variant 1 B111
Chr7:14622066 G A EMS_canonical_SNV CDS_variant 2 A15,B4

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057920681.1
CTGAAGATCGAGTCAGGGGTGCAAGCGCGGCGGGGTGCGATGCGAGGCAAATCGAGCCTTTGCACTCGGTGGAGATGCTCTGAGTATTAATTAAAAGTTAAAATATGATGCAATTAATCCTTTTATTTATTTATCTAGAAAGAAAAGTAGTATGAAATGTCCGGTAAATTTTGTGAAAAGTACCAACAACGCTGCATGGTGATGAAATTTAATAAAAAGGGATAATAAAGGTGCGATTCCACGCAAAACAGATTTACATA...

CDS

1 records

下载 CDS FASTA
LOC130995410
ATGGCTGTAGCATCTACATCTTCCACCACCGCCGCCGCCGAGAAGAAACACTGGTGGCTCACCAATAGAAAGATTGTGGAGAGATACGTGAGGGAAGCGAGGATGTTGATCGCGACGCAGGAGCAGAGCGAGATTGCGGCGGCGCTCCGCCTCCTCGAAGCGGCGCTGGCTGTCGCGCCGCGCATGGAGGTGGCGCTCGAGCTTAAGGCACGGAGCCTGCTGTACCTCCGCCGGTTTAAGGAGGTGGCGGACATGCTTCA...

Protein

1 records

下载 Protein FASTA
XP_057776664.1
MAVASTSSTTAAAEKKHWWLTNRKIVERYVREARMLIATQEQSEIAAALRLLEAALAVAPRMEVALELKARSLLYLRRFKEVADMLQDYIPSLKMVISDDASTTGSSDNSSTQLSRERVTLLSSGGGSEPACTCFSVSDLKKKVITGLFKNVEEAGQWRYSVLGQACCHLGLMEDALVLLQTGKRMATAAFRRESISLSDDIFSSNKHPLSGENHQPERPPKTEFESISHLLCHIKLLIRRKTAAIAALDAGLYSEAVRH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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