当前解析结果
SmilChr07G001745| 统一新 Gene ID | SmilChr07G001745 |
|---|---|
| 名称 | SmilChr07G001745 |
| 描述 | protein transport protein SEC23 A |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14803798 - 14809162 / + |
| NCBI Gene ID | LOC130995431 |
|---|---|
| GeneID | 130995431 |
| locus_tag | - |
| NCBI Name | LOC130995431 |
| 原始查询 | LOC130995431 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein transport protein SEC23 A |
| 产物 | protein transport protein SEC23 A |
| Arabidopsis | AT4G01810 (AT4G01810)Sec23/Sec24 protein transport family protein [Source:NCBI gene (formerly Entrezgene);Acc:828105] identity=75.6; qcov=0.968; evalue=0; confidence=high |
| Rice | Os01g0321700 (P0426D06.22-1)- identity=69.4; qcov=0.878; evalue=0; confidence=high |
| GO | GO:0005096 (GTPase activator activity); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0008270 (zinc ion binding); GO:0030127 (COPII vesicle coat); GO:0070971 (endoplasmic reticulum exit site); GO:0090110 (COPII-coated vesicle cargo loading) |
| KEGG | - |
| Pfam | PF04810 (zf-Sec23_Sec24); PF04811 (Sec23_trunk); PF04815 (Sec23_helical); PF08033 (Sec23_BS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995431 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057776689.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057776689.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057776689.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057776689.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057776689.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14804353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B60,C15,C35,C64,C66 |
Chr7:14804456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B91,C12,C53 |
Chr7:14805774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr7:14805909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B98 |
Chr7:14805959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:14806075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr7:14806287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr7:14806325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B129,B7,D6,D7 |
Chr7:14806559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776689.1PF04810
zf-Sec23_Sec24 185-223 aa
PF04811
Sec23_trunk 267-493 aa
PF08033
Sec23_BS 510-602 aa
PF04815
Sec23_helical 616-712 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776689.1 |
Pfam | PF04810 |
zf-Sec23_Sec24 | Domain | 185 | 223 | 4.7e-11 | 43.2 | Sec23/Sec24 zinc finger |
XP_057776689.1 |
Pfam | PF04811 |
Sec23_trunk | Domain | 267 | 493 | 3.8e-15 | 56.9 | Sec23/Sec24 trunk domain |
XP_057776689.1 |
Pfam | PF08033 |
Sec23_BS | Domain | 510 | 602 | 7.1e-14 | 52.9 | Sec23/Sec24 beta-sandwich domain |
XP_057776689.1 |
Pfam | PF04815 |
Sec23_helical | Domain | 616 | 712 | 1.6e-09 | 38.2 | Sec23/Sec24 helical domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。