当前解析结果
SmilChr07G001746| 统一新 Gene ID | SmilChr07G001746 |
|---|---|
| 名称 | SmilChr07G001746 |
| 描述 | uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14809767 - 14815717 / + |
| NCBI Gene ID | LOC130995432 |
|---|---|
| GeneID | 130995432 |
| locus_tag | - |
| NCBI Name | LOC130995432 |
| 原始查询 | LOC130995432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402]; symbol=AT5G05200; hit=AT5G05200; species=arabidopsis; confidence=high |
| 产物 | Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402]; symbol=AT5G05200; hit=AT5G05200; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G05200 (AT5G05200)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402] identity=74.5; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0227800- identity=74.3; qcov=0.914; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0010287 (plastoglobule) |
| KEGG | - |
| Pfam | PF03109 (ABC1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057776690.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057776690.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 0.60000 | XP_057776690.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057776690.1 |
| 5 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057776690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14810025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:14810131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:14810179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B106,B26,C45 |
Chr7:14810777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B128,B34,C50 |
Chr7:14812905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B86,C76 |
Chr7:14814546 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B55 |
Chr7:14814546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr7:14815154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B58,B68,C74 |
Chr7:14815171 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | B100,B11,B51,C18,D2 |
Chr7:14815171 |
GC |
G |
1bp_deletion | CDS_variant | 5 | B100,B11,B51,C18,D2 |
Chr7:14815173 |
A |
AGC |
2bp_insertion | frameshift_variant | 5 | B100,B11,B51,C18,D2 |
Chr7:14815173 |
A |
AGC |
2bp_insertion | CDS_variant | 5 | B100,B11,B51,C18,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776690.1PF03109
ABC1 165-411 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776690.1 |
Pfam | PF03109 |
ABC1 | Domain | 165 | 411 | 1.3e-60 | 205.3 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。