Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001750`

染色体: Chr07 坐标: 14826030-14833125 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001750`
名称	SmilChr07G001750
描述	eukaryotic translation initiation factor 3 subunit A-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14826030 - 14833125 / `-`

ID 对照

NCBI Gene ID	`LOC130995434`
GeneID	`130995434`
locus_tag	`-`
NCBI Name	`LOC130995434`
原始查询	`LOC130995434`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	eukaryotic translation initiation factor 3 subunit A-like
产物	eukaryotic translation initiation factor 3 subunit A-like
Arabidopsis	`AT4G11420` (EIF3A) eukaryotic translation initiation factor 3A [Source:NCBI gene (formerly Entrezgene);Acc:826746] identity=67.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0120800` (eIF-3a) - identity=70.2; qcov=0.882; evalue=0; confidence=high
GO	GO:0001732 (formation of cytoplasmic translation initiation complex); GO:0002188 (translation reinitiation); GO:0003729 (mRNA binding); GO:0003743 (translation initiation factor activity); GO:0043614 (multi-eIF complex); GO:0071540 (eukaryotic translation initiation factor 3 complex, eIF3e); GO:0071541 (eukaryotic translation initiation factor 3 complex, eIF3m)
KEGG	-
Pfam	PF01399 (PCI); PF22591 (eIF3a_PCI_TPR-like)
InterPro	-
eggNOG	-
NR	GeneID:130995434

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057776693.1`
2	Cytoplasm	细胞质	0.80000	`XP_057776693.1`
3	Nucleus	细胞核	0.20000	`XP_057776693.1`
4	Nucleoplasm	核质	0.20000	`XP_057776693.1`
5	Vesicle	囊泡	0.20000	`XP_057776693.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14826307`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C36
`Chr7:14826307`	`AG`	`A`	1bp_deletion	CDS_variant	1	C36
`Chr7:14826316`	`A`	`AG`	1bp_insertion	frameshift_variant	4	B121,B128,B34,C50
`Chr7:14826316`	`A`	`AG`	1bp_insertion	CDS_variant	4	B121,B128,B34,C50
`Chr7:14826338`	`CGA`	`C`	2bp_deletion	frameshift_variant	5	B139,B37,B55,C19,C36
`Chr7:14826338`	`CGA`	`C`	2bp_deletion	CDS_variant	5	B139,B37,B55,C19,C36
`Chr7:14826415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B4,B55,B78,C36
`Chr7:14826454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B91
`Chr7:14826580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A21,B101,B53,B77
`Chr7:14826979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr7:14826987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A21,B101,B53,B77
`Chr7:14827921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B73,C7,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776693.1

960 aa

480

960

eIF3a_PCI_TPR-like

PCI

PF22591 eIF3a_PCI_TPR-like 8-408 aa PF01399 PCI 437-508 aa

XP_057776694.1

960 aa

480

960

eIF3a_PCI_TPR-like

PCI

PF22591 eIF3a_PCI_TPR-like 8-408 aa PF01399 PCI 437-508 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776693.1`	Pfam	`PF22591`	eIF3a_PCI_TPR-like	Repeat	8	408	5.1e-134	447.8	eIF3a, PCI domain, TPR-like region
`XP_057776693.1`	Pfam	`PF01399`	PCI	Domain	437	508	6.6e-06	27.0	PCI domain
`XP_057776694.1`	Pfam	`PF22591`	eIF3a_PCI_TPR-like	Repeat	8	408	5.1e-134	447.8	eIF3a, PCI domain, TPR-like region
`XP_057776694.1`	Pfam	`PF01399`	PCI	Domain	437	508	6.6e-06	27.0	PCI domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920711.1
AATTCAAAAAATAAAATAAAAATAAAATAATTAAACCCTAACGCAGGCGTATCAGATCCAATACTCTTTAGACTTACAGACGCCGCCGCCGCCGATTCATCATTCGATCTCAAAGCCGCTGTTGCGGTCCGCCAACGACAGAGTCACTTCCACATTCAGCGTTTCCAGTTTTACAGAATACAGAGTTGGATTGTCTTCCAATATGGCTACATTTGCCAGACCTGAGAATGCCTTAAAGCGAGCTGAAGAGTTGATCAATG...

XM_057920710.1
AAAAATAAAATAAAAATAAAATAATTAAACCCTAACGCAGGCGTATCAGATCCAATACTCTTTAGACTTACAGACGCCGCCGCCGCCGATTCATCATTCGATCTCAAAGCCGCTGTTGCGGTCCGCCAACGACAGAGTCACTTCCACATTCAGCGTAATACAGAGTTGGATTGTCTTCCAATATGGCTACATTTGCCAGACCTGAGAATGCCTTAAAGCGAGCTGAAGAGTTGATCAATGTTGGTCAAAAGCAAGAAGCA...

CDS

2 records

下载 CDS FASTA

LOC130995434
ATGGCTACATTTGCCAGACCTGAGAATGCCTTAAAGCGAGCTGAAGAGTTGATCAATGTTGGTCAAAAGCAAGAAGCACTTGAGGCTCTTCATAGTTTTATTACCTCGAGGAGGTATAGAGCCTGGACAAGAACACACGAAAAAATAATGTTCAAGTATGTGGAGCTGTGTGTTGACATGAGGAGGGGAAGACATGCCAAGGATGGCCTTATCCAATACCGTGGTATCTGCCAACAGGTCAACATAACTTCATTGGAGGA...

Protein

2 records

下载 Protein FASTA

XP_057776693.1
MATFARPENALKRAEELINVGQKQEALEALHSFITSRRYRAWTRTHEKIMFKYVELCVDMRRGRHAKDGLIQYRGICQQVNITSLEEVIKHFMQLATEKAELARNQAQALEEALDVDDLEADKRPEDLLLSYVSGEKGKDRSDRELVTPWFKFLWETYRSVLEILRNNSRLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLTVAESLQLYLDTRFEQLKVATELELWQEAFRSIEDIFGL...

XP_057776694.1
MATFARPENALKRAEELINVGQKQEALEALHSFITSRRYRAWTRTHEKIMFKYVELCVDMRRGRHAKDGLIQYRGICQQVNITSLEEVIKHFMQLATEKAELARNQAQALEEALDVDDLEADKRPEDLLLSYVSGEKGKDRSDRELVTPWFKFLWETYRSVLEILRNNSRLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLTVAESLQLYLDTRFEQLKVATELELWQEAFRSIEDIFGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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