当前解析结果
SmilChr07G001748| 统一新 Gene ID | SmilChr07G001748 |
|---|---|
| 名称 | SmilChr07G001748 |
| 描述 | uncharacterized SmilChr07G001748 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14821920 - 14824006 / + |
| NCBI Gene ID | LOC130995435 |
|---|---|
| GeneID | 130995435 |
| locus_tag | - |
| NCBI Name | LOC130995435 |
| 原始查询 | LOC130995435 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824813]; symbol=AT3G56460; hit=AT3G56460; species=arabidopsis; confidence=high |
| 产物 | GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824813]; symbol=AT3G56460; hit=AT3G56460; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G56460 (AT3G56460)GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824813] identity=73.7; qcov=0.991; evalue=4.99e-178; confidence=high |
| Rice | Os05g0313500- identity=69.7; qcov=0.948; evalue=6.6e-154; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995435 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057776695.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776695.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776695.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776695.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14822088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:14822212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:14822299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B10,B131,B26,C47 |
Chr7:14822314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B72,B82,C83 |
Chr7:14822315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B97 |
Chr7:14822361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,C78,C8 |
Chr7:14822374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B72,B82,C83 |
Chr7:14822957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:14822966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,A25,B50 |
Chr7:14823183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,B97 |
Chr7:14823648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B4,C5,D6 |
Chr7:14823683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B128,B34,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776695.1PF08240
ADH_N 39-121 aa
PF00107
ADH_zinc_N 162-282 aa
PF13602
ADH_zinc_N_2 194-336 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776695.1 |
Pfam | PF08240 |
ADH_N | Domain | 39 | 121 | 6.5e-16 | 59.2 | Alcohol dehydrogenase GroES-like domain |
XP_057776695.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 162 | 282 | 2.8e-22 | 79.8 | Zinc-binding dehydrogenase |
XP_057776695.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 194 | 336 | 1.6e-16 | 62.1 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。