Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001762`

染色体: Chr07 坐标: 14912472-14919896 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001762`
名称	SmilChr07G001762
描述	uncharacterized SmilChr07G001762
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14912472 - 14919896 / `+`

ID 对照

NCBI Gene ID	`LOC130995449`
GeneID	`130995449`
locus_tag	`-`
NCBI Name	`LOC130995449`
原始查询	`LOC130995449`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglycolate phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:834941]; symbol=AT5G48830; hit=AT5G48830; species=arabidopsis; confidence=medium
产物	phosphoglycolate phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:834941]; symbol=AT5G48830; hit=AT5G48830; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G48830` (AT5G48830) phosphoglycolate phosphatase [Source:NCBI gene (formerly Entrezgene);Acc:834941] identity=43.5; qcov=0.895; evalue=1.86e-78; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF12452 (DUF3685)
InterPro	-
eggNOG	-
NR	GeneID:130995449

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776714.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057776714.1`
3	Chloroplast thylakoid	类囊体	0.60000	`XP_057776717.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057776717.1`
5	Nucleus	细胞核	0.00000	`XP_057776714.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14915188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B19
`Chr7:14915228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:14915231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,C46
`Chr7:14915269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:14915287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:14915301`	`TGC`	`T`	2bp_deletion	frameshift_variant	20	A14,A18,A20,B10,B103,B130,B133,B16,B17,B36,B48,B95,C12,C13,C19,C29,C33,C54,C73,D1
`Chr7:14915373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:14915411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:14915662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:14915750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,B131
`Chr7:14916273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B115,B93,C70
`Chr7:14916467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B136,B34,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776714.1

518 aa

259

518

DUF3685

PF12452 DUF3685 321-413 aa PF12452 DUF3685 440-511 aa

XP_057776715.1

518 aa

259

518

DUF3685

PF12452 DUF3685 321-413 aa PF12452 DUF3685 440-511 aa

XP_057776716.1

518 aa

259

518

DUF3685

PF12452 DUF3685 321-413 aa PF12452 DUF3685 440-511 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776714.1`	Pfam	`PF12452`	DUF3685	Family	321	413	8.6e-21	75.2	Protein of unknown function (DUF3685)
`XP_057776714.1`	Pfam	`PF12452`	DUF3685	Family	440	511	8.6e-21	75.2	Protein of unknown function (DUF3685)
`XP_057776715.1`	Pfam	`PF12452`	DUF3685	Family	321	413	8.6e-21	75.2	Protein of unknown function (DUF3685)
`XP_057776715.1`	Pfam	`PF12452`	DUF3685	Family	440	511	8.6e-21	75.2	Protein of unknown function (DUF3685)
`XP_057776716.1`	Pfam	`PF12452`	DUF3685	Family	321	413	8.6e-21	75.2	Protein of unknown function (DUF3685)
`XP_057776716.1`	Pfam	`PF12452`	DUF3685	Family	440	511	8.6e-21	75.2	Protein of unknown function (DUF3685)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057920732.1
GTTGATGGTAATTTGGTGGTATTCTATTCTTCCCCTCGTCTCTCATTTCCATTAGATATTCTATCTTTCGTTTTCAGAGAATTAGATTGGAAAAGTTTCACGTGGAAAATCAGGTGCTAATCTGAAACCTGTAGCAAACGAGCCTTTTCCATGGTGTCTATAAGACCAAAGAGGACGTGCTGATCACTTGTATGGTAGCTTGCAAATGGCAGAGTATGTAGCCATTCCACCACATGTCAAGCTTCAAGTTCATGGTACTC...

XM_057920735.1
AGATTGGAAAAGTTTCACGTGGAAAATCAGGTGCTAATCTGAAACCTGTAGCAAACGAGCCTTTTCCATGGTGTCTATAAGACCAAAGAGGACGTGCTGATCACTTGTATGGTAGCTTGCAAATGGCAGAGTATGTAGCCATTCCACCACATGTCAAGCTTCAAGTTCATGGTACTCTCTTTGAAGAGTGGCCTTGTCTGCCAAAAACTCCCTATCTACCAGCCAAAAGGGGCTTTTATAATGGAAGGAAAAAAGTTAGT...

CDS

5 records

下载 CDS FASTA

LOC130995449
ATGGCAGAGTATGTAGCCATTCCACCACATGTCAAGCTTCAAGTTCATGGTACTCTCTTTGAAGAGTGGCCTTGTCTGCCAAAAACTCCCTATCTACCAGCCAAAAGGGGCTTTTATAATGGAAGGAAAAAAGTTAGTGGGCTGTCTTCTTGGAAGGCCTGCAAGATCATTGCACCTCAAAGAAAAATCCTGAATGGAAGTCCAAGGCGGAAGAATACCAGGTGCTATTGCTTGAATGCCCTAGCCAACGTTGATGCTGC...

Protein

5 records

下载 Protein FASTA

XP_057776714.1
MAEYVAIPPHVKLQVHGTLFEEWPCLPKTPYLPAKRGFYNGRKKVSGLSSWKACKIIAPQRKILNGSPRRKNTRCYCLNALANVDAAAAAAASSDWVPFIDQVLLLASISLTYMAGVVPLEKSPFNTQTSVPLFDMVPENSSSSGSSVTNDDEVWLQFAWDVVRGKLTDSLSAISNGVNPSENIGKFEQNPGTQPSSLYAVSEGPRIRLLWRSFQWLKKEVTNISVNSSAKSANDFLAVFGETVQNCSRPLCMAWLEEEI...

XP_057776715.1
MAEYVAIPPHVKLQVHGTLFEEWPCLPKTPYLPAKRGFYNGRKKVSGLSSWKACKIIAPQRKILNGSPRRKNTRCYCLNALANVDAAAAAAASSDWVPFIDQVLLLASISLTYMAGVVPLEKSPFNTQTSVPLFDMVPENSSSSGSSVTNDDEVWLQFAWDVVRGKLTDSLSAISNGVNPSENIGKFEQNPGTQPSSLYAVSEGPRIRLLWRSFQWLKKEVTNISVNSSAKSANDFLAVFGETVQNCSRPLCMAWLEEEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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