Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001774`

染色体: Chr07 坐标: 15032612-15036593 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001774`
名称	SmilChr07G001774
描述	uncharacterized SmilChr07G001774
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	15032612 - 15036593 / `-`

ID 对照

NCBI Gene ID	`LOC130995462`
GeneID	`130995462`
locus_tag	`-`
NCBI Name	`LOC130995462`
原始查询	`LOC130995462`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cellulose synthase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:822072]; symbol=AT3G24740; hit=AT3G24740; species=arabidopsis; confidence=high
产物	cellulose synthase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:822072]; symbol=AT3G24740; hit=AT3G24740; species=arabidopsis; confidence=high
Arabidopsis	`AT3G24740` (AT3G24740) cellulose synthase, putative (DUF1644) [Source:NCBI gene (formerly Entrezgene);Acc:822072] identity=53.35; qcov=0.908; evalue=5.32e-112; confidence=high
Rice	`Os02g0566500` - identity=37.4; qcov=0.667; evalue=2.7e-49; confidence=medium
GO	-
KEGG	-
Pfam	PF07800 (DUF1644)
InterPro	-
eggNOG	-
NR	GeneID:130995462

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776728.1`
2	Cytoplasm	细胞质	0.60000	`XP_057776728.1`
3	Cytosol	细胞质基质	0.20000	`XP_057776728.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:15033002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:15033281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B69,B99,C14,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776728.1

381 aa

190

381

DUF1644

PF07800 DUF1644 22-245 aa

XP_057776730.1

381 aa

190

381

DUF1644

PF07800 DUF1644 22-245 aa

XP_057776731.1

381 aa

190

381

DUF1644

PF07800 DUF1644 22-245 aa

XP_057776732.1

381 aa

190

381

DUF1644

PF07800 DUF1644 22-245 aa

XP_057776733.1

381 aa

190

381

DUF1644

PF07800 DUF1644 22-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776728.1`	Pfam	`PF07800`	DUF1644	Family	22	245	1.1e-68	231.2	Protein of unknown function (DUF1644)
`XP_057776730.1`	Pfam	`PF07800`	DUF1644	Family	22	245	1.1e-68	231.2	Protein of unknown function (DUF1644)
`XP_057776731.1`	Pfam	`PF07800`	DUF1644	Family	22	245	1.1e-68	231.2	Protein of unknown function (DUF1644)
`XP_057776732.1`	Pfam	`PF07800`	DUF1644	Family	22	245	1.1e-68	231.2	Protein of unknown function (DUF1644)
`XP_057776733.1`	Pfam	`PF07800`	DUF1644	Family	22	245	1.1e-68	231.2	Protein of unknown function (DUF1644)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057920748.1
TTTTAGGAAAATATTGTTATTGTTACTATTATTAATAAATAATATTGCCCCTCTATCCCAATCTGTATATAGGACGCAACCTGCCCTCTTTCGCCATATTCGACCCCTTCTTTTCCTGATCGGACTATATCTATATCTCGTAAAATCCACCCCAATTTTTTTCTTTATTTCAATAAGCATAAACTCCTCGAACACAATCAATCAATCAATCTAAGGATAATCGCACCTCCATCTCTAATTCGCCGACTGTAATTCCGCAC...

XM_057920749.1
TAGGACGCAACCTGCCCTCTTTCGCCATATTCGACCCCTTCTTTTCCTGATCGGACTATATCTATATCTCGTAAAATCCACCCCAATTTTTTTCTTTATTTCAATAAGCATAAACTCCTCGAACACAATCAATCAATCAATCTAAGGATAATCGCACCTCCATCTCTAATTCGCCGACTGTTGTAGGACTCATTGGTGATTGTGGCTCCCCAAATATGCAATAATTCTTTACTTGAAGCCTTATTACTCCGAGAATTTTA...

CDS

5 records

下载 CDS FASTA

lcl|NC_080393.1_cds_XP_057776728.1_36679
ATGGCTAGTAGGAAAAGAAGCATATCGAATGATTCAGATATGTCTCATCTGTACAAGGAATTGGATGAAGCCTTATGTCCCATATGCATGGACCACCCGCACAATGCTGTTCTTCTCATTTGCAGTTCCCATGATAAGAGCTGTCGCTCATACATATGTGATACTAGCTATAGGCATTCGAATTGTTTGGATCGTTTTAAAAAACTGAAAGAGGAAAATGTAGACAACTTGTCTGCAACTAGTTTGGTACCAGAAGGTAA...

lcl|NC_080393.1_cds_XP_057776730.1_36680
ATGGCTAGTAGGAAAAGAAGCATATCGAATGATTCAGATATGTCTCATCTGTACAAGGAATTGGATGAAGCCTTATGTCCCATATGCATGGACCACCCGCACAATGCTGTTCTTCTCATTTGCAGTTCCCATGATAAGAGCTGTCGCTCATACATATGTGATACTAGCTATAGGCATTCGAATTGTTTGGATCGTTTTAAAAAACTGAAAGAGGAAAATGTAGACAACTTGTCTGCAACTAGTTTGGTACCAGAAGGTAA...

Protein

5 records

下载 Protein FASTA

XP_057776728.1
MASRKRSISNDSDMSHLYKELDEALCPICMDHPHNAVLLICSSHDKSCRSYICDTSYRHSNCLDRFKKLKEENVDNLSATSLVPEGNQDSVLSGNLDLAVMTDHANHTETRTSSMEHMDMRQGDSGGHSTHNANPSSGEREGRIWGSLDIGEPNMEKSEEVSNLRCPLCRGRVLGWKVVEEARKYLNLKTRSCSHESCLFSGSYRELRRHARRVHPTVRPADVDPSRQRAWHRLEGQREYNDIVSAIRSAMPGAVVFGDY...

XP_057776730.1
MASRKRSISNDSDMSHLYKELDEALCPICMDHPHNAVLLICSSHDKSCRSYICDTSYRHSNCLDRFKKLKEENVDNLSATSLVPEGNQDSVLSGNLDLAVMTDHANHTETRTSSMEHMDMRQGDSGGHSTHNANPSSGEREGRIWGSLDIGEPNMEKSEEVSNLRCPLCRGRVLGWKVVEEARKYLNLKTRSCSHESCLFSGSYRELRRHARRVHPTVRPADVDPSRQRAWHRLEGQREYNDIVSAIRSAMPGAVVFGDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器