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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001785

染色体: Chr07 坐标: 15179214-15197763 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001785
名称SmilChr07G001785
描述callose synthase 3
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向15179214 - 15197763 / -

ID 对照

NCBI Gene IDLOC130995471
GeneID130995471
locus_tag-
NCBI NameLOC130995471
原始查询LOC130995471

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述callose synthase 3
产物callose synthase 3
ArabidopsisAT5G13000 (GSL12)
glucan synthase-like 12 [Source:NCBI gene (formerly Entrezgene);Acc:831140]
identity=84.9; qcov=1; evalue=0; confidence=high
RiceOs06g0182300 (GSL5)
-
identity=61.6; qcov=0.999; evalue=0; confidence=high
GOGO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process)
KEGG-
PfamPF02364 (Glucan_synthase); PF04652 (Vta1); PF14288 (FKS1_dom1); PF25968 (CALS1)
InterPro-
eggNOG-
NRGeneID:130995471

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057776742.1
2 Nucleus 细胞核 0.00000 XP_057776742.1
3 Chromosome 染色体 0.00000 XP_057776742.1
4 Centromere 着丝粒 0.00000 XP_057776742.1
5 Chromatin 染色质 0.00000 XP_057776742.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:15180824 G A EMS_canonical_SNV CDS_variant 2 A13,B125
Chr7:15181169 C T EMS_canonical_SNV CDS_variant 1 B82
Chr7:15181280 C T EMS_canonical_SNV CDS_variant 1 C2
Chr7:15183183 G A EMS_canonical_SNV CDS_variant 3 B45,C11,C69
Chr7:15185287 G A EMS_canonical_SNV CDS_variant 1 B35
Chr7:15185368 G A EMS_canonical_SNV CDS_variant 1 B120
Chr7:15185369 G A EMS_canonical_SNV CDS_variant 1 B120
Chr7:15186821 C T EMS_canonical_SNV CDS_variant 2 A13,B125
Chr7:15188400 G A EMS_canonical_SNV CDS_variant 2 A13,B125
Chr7:15188763 C T EMS_canonical_SNV CDS_variant 2 A13,B125
Chr7:15188793 C T EMS_canonical_SNV CDS_variant 1 B19
Chr7:15189231 ACC A 2bp_deletion frameshift_variant 1 B127

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776742.1
1949 aa
N
1
974
1949
Vta1
FKS1_dom1
CALS1
Glucan_synthase
Glucan_synthase
C
PF04652 Vta1 45-170 aa PF14288 FKS1_dom1 322-434 aa PF25968 CALS1 856-1045 aa PF02364 Glucan_synthase 1052-1142 aa PF02364 Glucan_synthase 1145-1756 aa
XP_057776743.1
1949 aa
N
1
974
1949
Vta1
FKS1_dom1
CALS1
Glucan_synthase
Glucan_synthase
C
PF04652 Vta1 45-170 aa PF14288 FKS1_dom1 322-434 aa PF25968 CALS1 856-1045 aa PF02364 Glucan_synthase 1052-1142 aa PF02364 Glucan_synthase 1145-1756 aa
XP_057776744.1
1949 aa
N
1
974
1949
Vta1
FKS1_dom1
CALS1
Glucan_synthase
Glucan_synthase
C
PF04652 Vta1 45-170 aa PF14288 FKS1_dom1 322-434 aa PF25968 CALS1 856-1045 aa PF02364 Glucan_synthase 1052-1142 aa PF02364 Glucan_synthase 1145-1756 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776742.1 Pfam PF04652 Vta1 Family 45 170 6.2e-17 62.7 Vta1 like
XP_057776742.1 Pfam PF14288 FKS1_dom1 Family 322 434 1.6e-43 148.2 1,3-beta-glucan synthase subunit FKS1, domain-1
XP_057776742.1 Pfam PF25968 CALS1 Domain 856 1045 4.5e-66 222.7 Callose synthase 1 domain
XP_057776742.1 Pfam PF02364 Glucan_synthase Family 1052 1142 8.6e-239 795.7 1,3-beta-glucan synthase component
XP_057776742.1 Pfam PF02364 Glucan_synthase Family 1145 1756 8.6e-239 795.7 1,3-beta-glucan synthase component
XP_057776743.1 Pfam PF04652 Vta1 Family 45 170 6.2e-17 62.7 Vta1 like
XP_057776743.1 Pfam PF14288 FKS1_dom1 Family 322 434 1.6e-43 148.2 1,3-beta-glucan synthase subunit FKS1, domain-1
XP_057776743.1 Pfam PF25968 CALS1 Domain 856 1045 4.5e-66 222.7 Callose synthase 1 domain
XP_057776743.1 Pfam PF02364 Glucan_synthase Family 1052 1142 8.6e-239 795.7 1,3-beta-glucan synthase component
XP_057776743.1 Pfam PF02364 Glucan_synthase Family 1145 1756 8.6e-239 795.7 1,3-beta-glucan synthase component
XP_057776744.1 Pfam PF04652 Vta1 Family 45 170 6.2e-17 62.7 Vta1 like
XP_057776744.1 Pfam PF14288 FKS1_dom1 Family 322 434 1.6e-43 148.2 1,3-beta-glucan synthase subunit FKS1, domain-1
XP_057776744.1 Pfam PF25968 CALS1 Domain 856 1045 4.5e-66 222.7 Callose synthase 1 domain
XP_057776744.1 Pfam PF02364 Glucan_synthase Family 1052 1142 8.6e-239 795.7 1,3-beta-glucan synthase component
XP_057776744.1 Pfam PF02364 Glucan_synthase Family 1145 1756 8.6e-239 795.7 1,3-beta-glucan synthase component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057920759.1
CATATTCCCTCCTTCTCTTTCTTCCTTTTCTTAACAAGTTAGCTTAAAACCACAGCACCACCGCCCTCTACACTTCCCTTTTCTCTCTCTTAGGGTTCTACATTCGAATATTTATCTCTCATCTTGCTTTTCTCAACCTCTCTGCAACTCAACAAAAGTATATGATTGTTCGGATACTTGCTTGAGGAGGGGGATACAAAGTGAAAATGTCATCGAGGGGAGGGTCGTCATCGCAGCAGAATCCGCAGTTGCAGCGGCGG...
XM_057920761.1
TCTTCCTTTTCTTAACAAGTTAGCTTAAAACCACAGCACCACCGCCCTCTACACTTCCCTTTTCTCTCTCTTAGGGTTCTACATTCGAATATTTATCTCTCATCTTGCTTTTCTCAACCTCTCTGCAACTCAACAATGGTGGGTGTGTTGTTGGCTCCATAAAAAATACTCTATATTTTAAAGCACTGAAGTATATGATTGTTCGGATACTTGCTTGAGGAGGGGGATACAAAGTGAAAATGTCATCGAGGGGAGGGTCG...

CDS

3 records

下载 CDS FASTA
LOC130995471
ATGTCATCGAGGGGAGGGTCGTCATCGCAGCAGAATCCGCAGTTGCAGCGGCGGATTACGCGCACTCAGACAGTGGGGAATCTCGGGGAGTCTGTCTTTGACAGTGAAGTAGTGCCGTCATCGCTGGTAGAAATTGCCCCCATTCTTCGAGTTGCCAATGAAGTTGAGCCTAGCAACCCACGTGTTGCCTACCTCTGTAGGTTTTATGCTTTTGAGAAGGCTCACAGGCTGGATCCAACTTCAAGTGGACGTGGTGTTCG...
LOC130995471
ATGTCATCGAGGGGAGGGTCGTCATCGCAGCAGAATCCGCAGTTGCAGCGGCGGATTACGCGCACTCAGACAGTGGGGAATCTCGGGGAGTCTGTCTTTGACAGTGAAGTAGTGCCGTCATCGCTGGTAGAAATTGCCCCCATTCTTCGAGTTGCCAATGAAGTTGAGCCTAGCAACCCACGTGTTGCCTACCTCTGTAGGTTTTATGCTTTTGAGAAGGCTCACAGGCTGGATCCAACTTCAAGTGGACGTGGTGTTCG...

Protein

3 records

下载 Protein FASTA
XP_057776742.1
MSSRGGSSSQQNPQLQRRITRTQTVGNLGESVFDSEVVPSSLVEIAPILRVANEVEPSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLERENDPTLIGRVKKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKAYQTANVLFEVLKAVNQTQSVEVDREILETHDKVAEKTEIYVPYNILPLDPDSANQAIMKYPEIQAAVHALRNTRGLLWPKDYKKKKDEDVLDWLQAMFGFQKDNVANQREHLI...
XP_057776743.1
MSSRGGSSSQQNPQLQRRITRTQTVGNLGESVFDSEVVPSSLVEIAPILRVANEVEPSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLERENDPTLIGRVKKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKAYQTANVLFEVLKAVNQTQSVEVDREILETHDKVAEKTEIYVPYNILPLDPDSANQAIMKYPEIQAAVHALRNTRGLLWPKDYKKKKDEDVLDWLQAMFGFQKDNVANQREHLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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