当前解析结果
SmilChr07G001789| 统一新 Gene ID | SmilChr07G001789 |
|---|---|
| 名称 | SmilChr07G001789 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15232689 - 15235507 / - |
| NCBI Gene ID | LOC130995476 |
|---|---|
| GeneID | 130995476 |
| locus_tag | - |
| NCBI Name | LOC130995476 |
| 原始查询 | LOC130995476 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 |
| Arabidopsis | AT5G24080 (AT5G24080)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832473] identity=32.5; qcov=1.03; evalue=8.71e-116; confidence=low |
| Rice | Os04g0475200- identity=46; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995476 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776756.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776756.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776756.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776756.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776756.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15232846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B18,B47,B73,C54 |
Chr7:15232877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B53 |
Chr7:15232998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C60 |
Chr7:15233108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C60 |
Chr7:15233198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:15233245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B132,B20 |
Chr7:15233303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B20 |
Chr7:15233329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:15233363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B49,B79,C13,C69 |
Chr7:15233768 |
C |
T |
EMS_canonical_SNV | stop_gained | 118 | A11,A13,A14,A2,A23,A25,A4,A5,A6,A8,B10,B100,B101,B102,B105,B109,B111,B112,B113,B115,B120,B122,B124,B125,B129,B13,B131,B132,B134,B135,B137,B15,B19,B24,B26,B27,B3,B30,B32,B36,B37,B38,B39,B40,B42,B43,B44,B45,B48,B54,B56,B59,B60,B62,B63,B64,B67,B70,B72,B76,B78,B81,B82,B84,B86,B88,B89,B9,B91,B93,B96,B97,C1,C10,C12,C15,C19,C22,C25,C27,C3,C31,C32,C33,C38,C4,C40,C43,C46,C49,C51,C52,C53,C55,C59,C6,C60,C61,C63,C64,C66,C68,C70,C72,C74,C76,C79,C80,C83,C84,C85,C86,C87,D10,D2,D5,D7,D9 |
Chr7:15234117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr7:15234302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776756.1PF01453
B_lectin 78-158 aa
PF07714
PK_Tyr_Ser-Thr 509-778 aa
PF00069
Pkinase 510-776 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776756.1 |
Pfam | PF01453 |
B_lectin | Repeat | 78 | 158 | 1.4e-16 | 61.6 | D-mannose binding lectin |
XP_057776756.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 509 | 778 | 9.3e-50 | 170.0 | Protein tyrosine and serine/threonine kinase |
XP_057776756.1 |
Pfam | PF00069 |
Pkinase | Domain | 510 | 776 | 3.9e-51 | 174.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。