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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001800

染色体: Chr07 坐标: 15366155-15373438 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001800
名称SmilChr07G001800
描述E3 ubiquitin protein ligase RIN2
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向15366155 - 15373438 / -

ID 对照

NCBI Gene IDLOC130995487
GeneID130995487
locus_tag-
NCBI NameLOC130995487
原始查询LOC130995487

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述E3 ubiquitin protein ligase RIN2
产物E3 ubiquitin protein ligase RIN2
ArabidopsisAT4G25230 (RIN2)
RPM1 interacting protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:828626]
identity=62.4; qcov=1.02; evalue=0; confidence=high
RiceOs07g0484300 (OJ1136_F08.121)
-
identity=50.8; qcov=0.937; evalue=4.77e-180; confidence=high
GOGO:0000151 (ubiquitin ligase complex); GO:0005829 (cytosol); GO:0005886 (plasma membrane); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0016567 (protein ubiquitination); GO:0034052 (positive regulation of plant-type hypersensitive response); GO:0043130 (ubiquitin binding); GO:0061630 (ubiquitin protein ligase activity)
KEGGsmil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
PfamPF00097 (zf-C3HC4); PF02845 (CUE); PF13639 (zf-RING_2); PF25563 (TPR_SYVN1_N)
InterPro-
eggNOG-
NRGeneID:130995487

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057776769.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057776769.1
3 Nucleus membrane 核膜 0.20000 XP_057776769.1
4 Nucleus 细胞核 0.00000 XP_057776769.1
5 Chromosome 染色体 0.00000 XP_057776769.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:15367157 C T EMS_canonical_SNV CDS_variant 2 A18,B35
Chr7:15367162 C T EMS_canonical_SNV CDS_variant 2 B65,D7
Chr7:15367244 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:15367317 C T EMS_canonical_SNV CDS_variant 1 A16
Chr7:15367827 C T EMS_canonical_SNV CDS_variant 1 A13
Chr7:15367901 C T EMS_canonical_SNV CDS_variant 1 B84
Chr7:15368106 G A EMS_canonical_SNV CDS_variant 3 B138,B31,D8
Chr7:15368572 C T EMS_canonical_SNV CDS_variant 2 B68,C82
Chr7:15369973 G A EMS_canonical_SNV CDS_variant 1 A1
Chr7:15371094 G A EMS_canonical_SNV CDS_variant 5 B57,B98,C28,C48,C62
Chr7:15371154 G A EMS_canonical_SNV CDS_variant 1 C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776769.1
574 aa
N
1
287
574
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
C
PF25563 TPR_SYVN1_N 57-302 aa PF13639 zf-RING_2 336-380 aa PF00097 zf-C3HC4 338-379 aa PF02845 CUE 538-574 aa
XP_057776770.1
574 aa
N
1
287
574
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
C
PF25563 TPR_SYVN1_N 57-302 aa PF13639 zf-RING_2 336-380 aa PF00097 zf-C3HC4 338-379 aa PF02845 CUE 538-574 aa
XP_057776771.1
573 aa
N
1
286
573
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
C
PF25563 TPR_SYVN1_N 57-302 aa PF13639 zf-RING_2 336-380 aa PF00097 zf-C3HC4 338-379 aa PF02845 CUE 537-573 aa
XP_057776772.1
573 aa
N
1
286
573
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
CUE
C
PF25563 TPR_SYVN1_N 57-302 aa PF13639 zf-RING_2 336-380 aa PF00097 zf-C3HC4 338-379 aa PF02845 CUE 537-573 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776769.1 Pfam PF25563 TPR_SYVN1_N Repeat 57 302 4.6e-16 59.8 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
XP_057776769.1 Pfam PF13639 zf-RING_2 Domain 336 380 6.6e-08 33.4 Ring finger domain
XP_057776769.1 Pfam PF00097 zf-C3HC4 Domain 338 379 5.9e-06 26.8 Zinc finger, C3HC4 type (RING finger)
XP_057776769.1 Pfam PF02845 CUE Domain 538 574 6.7e-06 26.4 CUE domain
XP_057776770.1 Pfam PF25563 TPR_SYVN1_N Repeat 57 302 9.1e-16 58.9 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
XP_057776770.1 Pfam PF13639 zf-RING_2 Domain 336 380 6.6e-08 33.4 Ring finger domain
XP_057776770.1 Pfam PF00097 zf-C3HC4 Domain 338 379 5.9e-06 26.8 Zinc finger, C3HC4 type (RING finger)
XP_057776770.1 Pfam PF02845 CUE Domain 538 574 6.7e-06 26.4 CUE domain
XP_057776771.1 Pfam PF25563 TPR_SYVN1_N Repeat 57 302 9e-16 58.9 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
XP_057776771.1 Pfam PF13639 zf-RING_2 Domain 336 380 6.6e-08 33.4 Ring finger domain
XP_057776771.1 Pfam PF00097 zf-C3HC4 Domain 338 379 5.9e-06 26.8 Zinc finger, C3HC4 type (RING finger)
XP_057776771.1 Pfam PF02845 CUE Domain 537 573 6.6e-06 26.4 CUE domain
XP_057776772.1 Pfam PF25563 TPR_SYVN1_N Repeat 57 302 4.6e-16 59.8 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
XP_057776772.1 Pfam PF13639 zf-RING_2 Domain 336 380 6.6e-08 33.4 Ring finger domain
XP_057776772.1 Pfam PF00097 zf-C3HC4 Domain 338 379 5.9e-06 26.8 Zinc finger, C3HC4 type (RING finger)
XP_057776772.1 Pfam PF02845 CUE Domain 537 573 6.6e-06 26.4 CUE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057920788.1
ATATTTATATGTTGACAAACATGCATATAAGTGTAGATATATATAAAATCCGAAATTCACTGACAATTTCCCTTCCCGCAAAAACACACATAGAAAGAGAAAAATAGATATCACCGATTCTGCTTGTTTCCGGACGCCTTCAAATCATCCTCAATAATTCGACATACTGTTGAAGCCTATAAAGCCTGATAATTTGAAGGAGTGTTTCCGAAACCAGTTAAACAAAGCTATAGGCTGTTTCTCTCCATTGAAATATCGGG...
XM_057920787.1
ATATTTATATGTTGACAAACATGCATATAAGTGTAGATATATATAAAATCCGAAATTCACTGACAATTTCCCTTCCCGCAAAAACACACATAGAAAGAGAAAAATAGATATCACCGATTCTGCTTGTTTCCGGACGCCTTCAAATCATCCTCAATAATTCGACATACTGTTGAAGCCTATAAAGCCTGATAATTTGAAGGAGTGTTTCCGAAACCAGTTAAACAAAGCTATAGGCTGTTTCTCTCCATTGAAATATCGGG...

CDS

4 records

下载 CDS FASTA
LOC130995487
ATGGGTGTCAACTTCTTATCCATTTCTGTTGTCTGTACCATTCTGAGCCTGGTTGGCGTCCAGTATTGGACAGAAATCTCACTTGAAAAGCATCAATCAGATGTTTTGATTGTAAATGATCTTATCAATTCAGAAAATGCAACCCATACTCTTGAGCTTCTTTTTGGTTCATACATGACCCTTTTGCTGGTTTCCAGTTTGGCATTTAATGTCATCATCTTGGTAATTTTAGGCCTAAAGACAGTATTCTTTTCGGAGCT...
LOC130995487
ATGGGTGTCAACTTCTTATCCATTTCTGTTGTCTGTACCATTCTGAGCCTGGTTGGCGTCCAGTATTGGACAGAAATCTCACTTGAAAAGCATCAATCAGATGTTTTGATTGTAAATGATCTTATCAATTCAGAAAATGCAACCCATACTCTTGAGCTTCTTTTTGGTTCATACATGACCCTTTTGCTGGTTTCCAGTTTGGCATTTAATGTCATCATCTTGGTAATTTTAGGCCTAAAGACAGTATTCTTTTCGGAGCT...

Protein

4 records

下载 Protein FASTA
XP_057776769.1
MGVNFLSISVVCTILSLVGVQYWTEISLEKHQSDVLIVNDLINSENATHTLELLFGSYMTLLLVSSLAFNVIILVILGLKAIFFSELYTSEIRKMLERLVNYIIYKGTFLPLVVPPTIFQAGLWSTWLAMLCFLKMFQALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDLLWIFLCLTIYSAMTSSIFLLLFFEPSSIAFETLQAIVVHGFQLLDIWMHHSAGDAANCRLSKIFNMSSAGSLGEWKGMLIRNLGFF...
XP_057776770.1
MGVNFLSISVVCTILSLVGVQYWTEISLEKHQSDVLIVNDLINSENATHTLELLFGSYMTLLLVSSLAFNVIILVILGLKTVFFSELYTSEIRKMLERLVNYIIYKGTFLPLVVPPTIFQAGLWSTWLAMLCFLKMFQALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDLLWIFLCLTIYSAMTSSIFLLLFFEPSSIAFETLQAIVVHGFQLLDIWMHHSAGDAANCRLSKIFNMSSAGSLGEWKGMLIRNLGFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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