Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001803`

染色体: Chr07 坐标: 15411427-15416145 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001803`
名称	SmilChr07G001803
描述	leucine-rich repeat receptor-like protein kinase TDR
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	15411427 - 15416145 / `-`

ID 对照

NCBI Gene ID	`LOC130995490`
GeneID	`130995490`
locus_tag	`-`
NCBI Name	`LOC130995490`
原始查询	`LOC130995490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	leucine-rich repeat receptor-like protein kinase TDR
产物	leucine-rich repeat receptor-like protein kinase TDR
Arabidopsis	`AT5G61480` (PXY) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836269] identity=61.6; qcov=0.963; evalue=0; confidence=high
Rice	`Os02g0111800` (OsCLVATA) - identity=46.8; qcov=0.978; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130995490

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776775.1`
2	Nucleus	细胞核	0.00000	`XP_057776775.1`
3	Chromosome	染色体	0.00000	`XP_057776775.1`
4	Centromere	着丝粒	0.00000	`XP_057776775.1`
5	Chromatin	染色质	0.00000	`XP_057776775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:15411653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B4,B91
`Chr7:15411666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C13,C69
`Chr7:15411728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C32,C46,C68,C72,C83
`Chr7:15413307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B28,C84,D2,D7
`Chr7:15413458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:15413514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B57,B98,C28,C48,C62
`Chr7:15413564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:15413710`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B35
`Chr7:15413710`	`TC`	`T`	1bp_deletion	CDS_variant	1	B35
`Chr7:15413711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:15413758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:15413766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776775.1

997 aa

498

997

LRRNT_2

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 25-62 aa PF13855 LRR_8 67-125 aa PF00560 LRR_1 91-112 aa PF00560 LRR_1 115-137 aa PF00560 LRR_1 187-209 aa PF00560 LRR_1 260-281 aa PF00560 LRR_1 284-306 aa PF00560 LRR_1 332-352 aa PF00560 LRR_1 452-473 aa PF00560 LRR_1 523-543 aa PF00560 LRR_1 548-569 aa PF00069 Pkinase 697-964 aa PF07714 PK_Tyr_Ser-Thr 697-967 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776775.1`	Pfam	`PF08263`	LRRNT_2	Family	25	62	3.2e-08	34.4	Leucine rich repeat N-terminal domain
`XP_057776775.1`	Pfam	`PF13855`	LRR_8	Repeat	67	125	4.1e-37	126.5	Leucine rich repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	91	112	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	187	209	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	260	281	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	284	306	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	332	352	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	452	473	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	523	543	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00560`	LRR_1	Repeat	548	569	2.9e-47	149.1	Leucine Rich Repeat
`XP_057776775.1`	Pfam	`PF00069`	Pkinase	Domain	697	964	1.1e-47	163.4	Protein kinase domain
`XP_057776775.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	697	967	1.6e-41	143.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920792.1
TACGGAAGTGAGAAATAGAAGTAGTATTTGAAAGGAGGAGGAATTAGCGCTTCTCTCTTTGTCTCTCTTTCCATACGCACACACACAGTTACACCACATTCTCCGCGTGAAGTGAATCATGATGAAACGCCTCCTGCGCCTTGCACTCCGAAAAAGCTAAACCCGAGCCATCAAAATCTTGCCCACCTTAAATTTTACTACTACATTGCTCATGACTTCTCATTCCTAGCCACCACTACCCAAAGCCATGAACTTCTTCT...

CDS

1 records

下载 CDS FASTA

LOC130995490
ATGAACTTCTTCTTCTTCTTCTTCTTCTTCATTCTCATCACACCGCCGGTAATGGCTCCCGCTCCGCCTCTCCAACTCCTCTCCCTCCTCTCAATCAAATCCTCCTTGAACGACCCCCTCAACACATTCCACGACTGGGATGCATCTGAGGGAAGCTGGTGTTCCTGGTCCGGCGTCAAATGCAACCACAACACAACCCAAGTCACCTCCTTGGACCTGTCCGGCCGGAACCTCTCCGGCGCCATATCAGCCGACATCAC...

Protein

1 records

下载 Protein FASTA

XP_057776775.1
MNFFFFFFFFILITPPVMAPAPPLQLLSLLSIKSSLNDPLNTFHDWDASEGSWCSWSGVKCNHNTTQVTSLDLSGRNLSGAISADITHLSHLHHLNLSRNSLDGPLPAAIFELPNLRTLDVNHNSFNSSFPPGVSNLKSLTLFNAYSNNFVGPLPQEFVHLTNLEMLNLGGSYFEGPIPTTYGSFPKLKYLYLSGNLLTGPIPAELGSLNQLEHIELGQMNQFDGGLPPEISGLSALLYLDVSSANLSGNIPAELSRLEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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