当前解析结果
SmilChr01G003722| 统一新 Gene ID | SmilChr01G003722 |
|---|---|
| 名称 | SmilChr01G003722 |
| 描述 | serine/threonine-protein kinase rio2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 55537272 - 55541751 / - |
| NCBI Gene ID | LOC130995492 |
|---|---|
| GeneID | 130995492 |
| locus_tag | - |
| NCBI Name | LOC130995492 |
| 原始查询 | LOC130995492 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase rio2-like |
| 产物 | serine/threonine-protein kinase rio2-like |
| Arabidopsis | AT3G51270 (AT3G51270)protein serine/threonine kinase [Source:NCBI gene (formerly Entrezgene);Acc:824290] identity=67.4; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0888700- identity=67.1; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006468 (protein phosphorylation); GO:0030490 (maturation of SSU-rRNA); GO:0030688 (preribosome, small subunit precursor) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01163 (RIO1); PF03109 (ABC1); PF09202 (Rio2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995492 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057776779.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057776779.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776779.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776779.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776779.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:55537708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,D4 |
Chr1:55537727 |
AT |
A |
1bp_deletion | frameshift_variant | 18 | A10,B108,B28,B35,B59,B65,B78,B85,B90,B92,B93,C2,C20,C23,C32,C55,C68,C82 |
Chr1:55537730 |
ATC |
A |
2bp_deletion | frameshift_variant | 18 | A10,B108,B28,B35,B59,B65,B78,B85,B90,B92,B93,C2,C20,C23,C32,C55,C68,C82 |
Chr1:55537785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:55537794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,D4 |
Chr1:55538291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B5,C40 |
Chr1:55538304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr1:55538649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B21,B28 |
Chr1:55540654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B63,B65,C43 |
Chr1:55540956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:55541211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr1:55541223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B29,B59,C30,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776779.1PF09202
Rio2_N 8-89 aa
PF01163
RIO1 106-283 aa
PF03109
ABC1 170-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776779.1 |
Pfam | PF09202 |
Rio2_N | Domain | 8 | 89 | 8.4e-35 | 119.7 | Rio2, N-terminal |
XP_057776779.1 |
Pfam | PF01163 |
RIO1 | Domain | 106 | 283 | 1.7e-55 | 188.3 | RIO domain |
XP_057776779.1 |
Pfam | PF03109 |
ABC1 | Domain | 170 | 260 | 4.8e-07 | 29.9 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。