Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001807`

染色体: Chr07 坐标: 15467653-15471702 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001807`
名称	SmilChr07G001807
描述	splicing factor-like protein 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	15467653 - 15471702 / `+`

ID 对照

NCBI Gene ID	`LOC130995495`
GeneID	`130995495`
locus_tag	`-`
NCBI Name	`LOC130995495`
原始查询	`LOC130995495`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	splicing factor-like protein 1
产物	splicing factor-like protein 1
Arabidopsis	`AT5G51300` (AT5G51300) splicing factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835204] identity=69.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0385700` - identity=79.2; qcov=0.37; evalue=1.61e-164; confidence=low
GO	GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0048024 (regulation of mRNA splicing, via spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00013 (KH_1); PF00076 (RRM_1); PF16275 (SF1-HH); PF22675 (KH-I_KHDC4-BBP)
InterPro	-
eggNOG	-
NR	GeneID:130995495

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776778.1`
2	Nucleoplasm	核质	1.00000	`XP_057776778.1`
3	Cytoplasm	细胞质	0.60000	`XP_057776778.1`
4	Chromosome	染色体	0.00000	`XP_057776778.1`
5	Centromere	着丝粒	0.00000	`XP_057776778.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:15467823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr7:15467829`	`T`	`TTG`	2bp_insertion	frameshift_variant	4	B10,B140,B64,C22
`Chr7:15467829`	`T`	`TTG`	2bp_insertion	CDS_variant	4	B10,B140,B64,C22
`Chr7:15467841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A5,B8,B93
`Chr7:15467955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B2
`Chr7:15468006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:15468087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B132,B87,C80
`Chr7:15468482`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B80
`Chr7:15468482`	`AT`	`A`	1bp_deletion	CDS_variant	1	B80
`Chr7:15469195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr7:15469592`	`C`	`CT`	1bp_insertion	frameshift_variant	49	A14,A15,A18,A20,A23,A24,A6,A7,B10,B103,B130,B133,B135,B140,B16,B18,B19,B23,B28,B30,B36,B46,B47,B48,B61,B73,B86,B87,B95,C12,C29,C32,C33,C37,C43,C54,C68,C71,C73,C76,C79,C8,C80,C84,C86,D1,D2,D7,D9
`Chr7:15469823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776778.1

779 aa

390

779

SF1-HH

KH-I_KHDC4-BBP

KH_1

RRM_1

PF16275 SF1-HH 119-230 aa PF22675 KH-I_KHDC4-BBP 244-326 aa PF00013 KH_1 250-278 aa PF00076 RRM_1 474-543 aa

XP_057776780.1

779 aa

390

779

SF1-HH

KH-I_KHDC4-BBP

KH_1

RRM_1

PF16275 SF1-HH 119-230 aa PF22675 KH-I_KHDC4-BBP 244-326 aa PF00013 KH_1 250-278 aa PF00076 RRM_1 474-543 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776778.1`	Pfam	`PF16275`	SF1-HH	Domain	119	230	1.4e-29	103.5	Splicing factor 1 helix-hairpin domain
`XP_057776778.1`	Pfam	`PF22675`	KH-I_KHDC4-BBP	Domain	244	326	4.6e-24	84.8	KHDC4/BBP-like, KH-domain type I
`XP_057776778.1`	Pfam	`PF00013`	KH_1	Domain	250	278	1.8e-05	25.1	KH domain
`XP_057776778.1`	Pfam	`PF00076`	RRM_1	Domain	474	543	6.2e-18	65.2	RNA recognition motif
`XP_057776780.1`	Pfam	`PF16275`	SF1-HH	Domain	119	230	1.4e-29	103.5	Splicing factor 1 helix-hairpin domain
`XP_057776780.1`	Pfam	`PF22675`	KH-I_KHDC4-BBP	Domain	244	326	4.6e-24	84.8	KHDC4/BBP-like, KH-domain type I
`XP_057776780.1`	Pfam	`PF00013`	KH_1	Domain	250	278	1.8e-05	25.1	KH domain
`XP_057776780.1`	Pfam	`PF00076`	RRM_1	Domain	474	543	6.2e-18	65.2	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920795.1
GATAATGTTTTGAGCAAGTACAAGTATATTATGACACGGAGTTAAACCTAAATTCGCGTATATACGGCCCTCTTTCCTTTCCGATCTCATAATTTTTACATCTCATCTCACCGATTGCCATTGCCATTGCCTTCTCTCCCTCCCCCAATGGACACTCTTCAATCCAACTACACAGATTCCCCCTCTCAGCCCCAATCCGAGCCCCAAACTCAACCCCAATATCCCTACGCTTACCAGAATTATCCCCAATCTGAAACCCC...

XM_057920797.1
ATGACACGGAGTTAAACCTAAATTCGCGTATATACGGCCCTCTTTCCTTTCCGATCTCATAATTTTTACATCTCATCTCACCGATTGCCATTGCCATTGCCTTCTCTCCCTCCCCCAATGGACACTCTTCAATCCAACTACACAGATTCCCCCTCTCAGCCCCAATCCGAGCCCCAAACTCAACCCCAATATCCCTACGCTTACCAGAATTATCCCCAATCTGAAACCCCCGACAAAACCCTAGACTCTTCCAACAACGC...

CDS

2 records

下载 CDS FASTA

LOC130995495
ATGGACACTCTTCAATCCAACTACACAGATTCCCCCTCTCAGCCCCAATCCGAGCCCCAAACTCAACCCCAATATCCCTACGCTTACCAGAATTATCCCCAATCTGAAACCCCCGACAAAACCCTAGACTCTTCCAACAACGCCGACGCTTCTATGCCCGCCCCCAAGCCGCTACTCTCCGAGAATGGTCTCGCCAACACGCACAGCGGCACCGACAAAGATTTCTCTGGCGGCGAGGAGGAGACCACCAGCCGCAGGCG...

Protein

2 records

下载 Protein FASTA

XP_057776778.1
MDTLQSNYTDSPSQPQSEPQTQPQYPYAYQNYPQSETPDKTLDSSNNADASMPAPKPLLSENGLANTHSGTDKDFSGGEEETTSRRRRRSRWDPPPSESGNDGDASTGDGNSGTAGRKRKSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRKLQSGMLLDDRPEGARSPSPEPIYDNMGVRINTREYRAREKLNRERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGN...

XP_057776780.1
MDTLQSNYTDSPSQPQSEPQTQPQYPYAYQNYPQSETPDKTLDSSNNADASMPAPKPLLSENGLANTHSGTDKDFSGGEEETTSRRRRRSRWDPPPSESGNDGDASTGDGNSGTAGRKRKSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRKLQSGMLLDDRPEGARSPSPEPIYDNMGVRINTREYRAREKLNRERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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