当前解析结果
SmilChr07G001808| 统一新 Gene ID | SmilChr07G001808 |
|---|---|
| 名称 | SmilChr07G001808 |
| 描述 | uncharacterized SmilChr07G001808 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15473538 - 15475178 / - |
| NCBI Gene ID | LOC130995496 |
|---|---|
| GeneID | 130995496 |
| locus_tag | - |
| NCBI Name | LOC130995496 |
| 原始查询 | LOC130995496 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:828620]; symbol=AT4G25170; hit=AT4G25170; species=arabidopsis; confidence=low |
| 产物 | Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:828620]; symbol=AT4G25170; hit=AT4G25170; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G25170 (AT4G25170)Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:828620] identity=34.1; qcov=1.09; evalue=1.87e-28; confidence=low |
| Rice | Os02g0657700- identity=33.7; qcov=0.743; evalue=6.77e-24; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF27707 (UCP012943) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995496 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057776781.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057776781.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057776781.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057776781.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057776781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15473686 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B29 |
Chr7:15473686 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B29 |
Chr7:15473715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr7:15473744 |
TTC |
T |
2bp_deletion | frameshift_variant | 66 | A14,A15,A20,A24,A5,A8,B1,B10,B103,B105,B115,B119,B122,B129,B130,B133,B134,B140,B15,B16,B20,B22,B24,B26,B33,B36,B4,B45,B46,B48,B53,B54,B65,B7,B78,B81,B82,B91,B95,C10,C12,C2,C23,C29,C30,C32,C33,C35,C38,C40,C41,C43,C49,C51,C53,C54,C60,C68,C73,C8,C81,C86,D1,D6,D7,D9 |
Chr7:15473749 |
AT |
A |
1bp_deletion | frameshift_variant | 64 | A14,A15,A20,A24,A5,A8,B1,B10,B103,B105,B115,B119,B122,B129,B130,B133,B134,B140,B15,B20,B22,B24,B26,B33,B36,B4,B45,B46,B48,B53,B54,B65,B7,B78,B81,B82,B91,B95,C10,C12,C2,C23,C29,C30,C32,C33,C35,C38,C40,C41,C43,C49,C51,C53,C54,C60,C68,C73,C8,C81,C86,D1,D6,D9 |
Chr7:15473873 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B123,B2 |
Chr7:15473873 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B123,B2 |
Chr7:15474722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:15474767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr7:15474957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776781.1PF27707
UCP012943 139-266 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776781.1 |
Pfam | PF27707 |
UCP012943 | Family | 139 | 266 | 2.8e-38 | 132.5 | Uncharacterised conserved protein UCP012943 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。