当前解析结果
SmilChr07G001819| 统一新 Gene ID | SmilChr07G001819 |
|---|---|
| 名称 | SmilChr07G001819 |
| 描述 | ethylene-responsive transcription factor ESR2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15659244 - 15660554 / + |
| NCBI Gene ID | LOC130995505 |
|---|---|
| GeneID | 130995505 |
| locus_tag | - |
| NCBI Name | LOC130995505 |
| 原始查询 | LOC130995505 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ESR2-like |
| 产物 | ethylene-responsive transcription factor ESR2-like |
| Arabidopsis | AT1G24590 (DRNL)DORNROSCHEN-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839073] identity=35.7; qcov=0.979; evalue=3.41e-44; confidence=medium |
| Rice | Os04g0399800 (OsERF#082)- identity=62.9; qcov=0.262; evalue=5.66e-30; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995505 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776792.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057776792.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057776792.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057776792.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057776792.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15659371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:15659429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:15659510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B4 |
Chr7:15659574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:15659588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C51,C79,D9 |
Chr7:15659600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr7:15659700 |
TCC |
T |
2bp_deletion | frameshift_variant | 6 | A15,B1,B4,B8,B84,C58 |
Chr7:15659738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B128 |
Chr7:15659883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A5,B8,C58 |
Chr7:15659992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,A20,C33 |
Chr7:15660009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:15660013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776792.1PF00847
AP2 43-92 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776792.1 |
Pfam | PF00847 |
AP2 | Domain | 43 | 92 | 1e-12 | 48.8 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。