Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001829`

染色体: Chr07 坐标: 15774711-15783456 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001829`
名称	SmilChr07G001829
描述	uncharacterized SmilChr07G001829
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	15774711 - 15783456 / `-`

ID 对照

NCBI Gene ID	`LOC130995515`
GeneID	`130995515`
locus_tag	`-`
NCBI Name	`LOC130995515`
原始查询	`LOC130995515`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Melibiase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822242]; symbol=AT3G26380; hit=AT3G26380; species=arabidopsis; confidence=high
产物	Melibiase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822242]; symbol=AT3G26380; hit=AT3G26380; species=arabidopsis; confidence=high
Arabidopsis	`AT3G26380` (AT3G26380) Melibiase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822242] identity=63.2; qcov=0.909; evalue=0; confidence=high
Rice	`Os01g0518500` - identity=52.5; qcov=0.91; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process)
KEGG	-
Pfam	PF16499 (Melibiase_2); PF17801 (Melibiase_C)
InterPro	-
eggNOG	-
NR	GeneID:130995515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057776804.1`
2	Vacuole	液泡	0.80000	`XP_057776806.1`
3	Nucleus	细胞核	0.00000	`XP_057776804.1`
4	Chromosome	染色体	0.00000	`XP_057776804.1`
5	Centromere	着丝粒	0.00000	`XP_057776804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:15774942`	`GCC`	`G`	2bp_deletion	frameshift_variant	13	A16,A8,B105,B134,B15,B45,B55,C10,C27,C38,C43,C49,C51
`Chr7:15774945`	`AT`	`A`	1bp_deletion	frameshift_variant	13	A16,A8,B105,B134,B15,B45,B55,C10,C27,C38,C43,C49,C51
`Chr7:15778235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:15778236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:15778272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:15779652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B51,C44,C80
`Chr7:15779932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C61,C7
`Chr7:15781020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B31,D8
`Chr7:15781633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:15781679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:15782332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:15782937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776804.1

690 aa

345

690

Melibiase_2

Melibiase_C

PF16499 Melibiase_2 44-141 aa PF16499 Melibiase_2 202-376 aa PF17801 Melibiase_C 546-626 aa

XP_057776805.1

675 aa

338

675

Melibiase_2

Melibiase_C

PF16499 Melibiase_2 29-126 aa PF16499 Melibiase_2 187-361 aa PF17801 Melibiase_C 531-611 aa

XP_057776806.1

592 aa

296

592

Melibiase_2

Melibiase_C

PF16499 Melibiase_2 104-278 aa PF17801 Melibiase_C 448-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776804.1`	Pfam	`PF16499`	Melibiase_2	Family	44	141	1.1e-22	81.4	Alpha galactosidase A
`XP_057776804.1`	Pfam	`PF16499`	Melibiase_2	Family	202	376	1.1e-22	81.4	Alpha galactosidase A
`XP_057776804.1`	Pfam	`PF17801`	Melibiase_C	Domain	546	626	3.5e-10	40.6	Alpha galactosidase C-terminal beta sandwich domain
`XP_057776805.1`	Pfam	`PF16499`	Melibiase_2	Family	29	126	1e-22	81.5	Alpha galactosidase A
`XP_057776805.1`	Pfam	`PF16499`	Melibiase_2	Family	187	361	1e-22	81.5	Alpha galactosidase A
`XP_057776805.1`	Pfam	`PF17801`	Melibiase_C	Domain	531	611	3.4e-10	40.6	Alpha galactosidase C-terminal beta sandwich domain
`XP_057776806.1`	Pfam	`PF16499`	Melibiase_2	Family	104	278	1.2e-17	64.8	Alpha galactosidase A
`XP_057776806.1`	Pfam	`PF17801`	Melibiase_C	Domain	448	528	3e-10	40.8	Alpha galactosidase C-terminal beta sandwich domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920822.1
AATAAAGTGAGATTTCCGGATTGAAATTTATAGTTTAGACTATAGATTTAATTTAAGATGGTGTTGGCATTGATTAGATGGATATTGTTTACCAACTTACAGATGATTCTGATCATTATGCTTCATAGATTTATTTCATGCGAGAATTTGTCAAGTTGATTTGATTTCTCAGCGTGAAAATTCGACTAAAATTGAAATTCTCTACAAAGTTAGAGAATGCTAAAAAATATACAAAAGTTCAAATTATTTATAAGATAACT...

XM_057920821.1
TTGTTTACCAACTTACAGATGATTCTGATCATTATGCTTCATAGATTTATTTCATGCGAGAATTTGTCAAGTTGATTTGATTTCTCAGCGTGAAAATTCGACTAAAATTGAAATTCTCTACAAAGTTAGAGAATGCTAAAAAATATACAAAAGTTCAAATTATTTATAAGATAACTCCAAAATTTAGATCATAAAAGTATATTTAATCTTTTAAAAGTTATGTTCAAAACATAATCATATTCCTTACATCACAAAAACTG...

CDS

3 records

下载 CDS FASTA

LOC130995515
ATGGGGTGGTTTCTTTTGGGCTCCGTTTATCTCTCTGCGCTTTCAACTCTTTTACTCGGCAGCCTGGGGGAAGTAGAGCAGGCTAGCTTACCACCGCGAGGTTGGAACTCTTATGATTCATTCTGTTGGACCATTTCCGAAGAAGAGTTTCTCCAAAATGCTGAACTCGTTGCTCACCGCTTGCGTAGTCATGGATATGAGTACGTGGTGGTGGATTATCTTTGGTATAGGAGGAAAGTTGAGGGAGCTTATGTTGATTC...

LOC130995515
ATGGTGCATTTTGTTAGCCTGGGGGAAGTAGAGCAGGCTAGCTTACCACCGCGAGGTTGGAACTCTTATGATTCATTCTGTTGGACCATTTCCGAAGAAGAGTTTCTCCAAAATGCTGAACTCGTTGCTCACCGCTTGCGTAGTCATGGATATGAGTACGTGGTGGTGGATTATCTTTGGTATAGGAGGAAAGTTGAGGGAGCTTATGTTGATTCTCTTGGATTCGATGTTATTGATGAATGGGGAAGGATGAAGCCTGA...

Protein

3 records

下载 Protein FASTA

XP_057776804.1
MGWFLLGSVYLSALSTLLLGSLGEVEQASLPPRGWNSYDSFCWTISEEEFLQNAELVAHRLRSHGYEYVVVDYLWYRRKVEGAYVDSLGFDVIDEWGRMKPDPGRWPSSRDGKGFTKVAEEVHKMGLKFGIHVMRGISTQAFNANTPILDVNTGKAYEESGRQWHAKDIGIKERTCAWMQNGFMSVDTKLGAGRAFLRSLYQQYADWGVDFVKHDCVFGKDFNLEEISYVSKVLTELNRPVVYSLSPGTSVTPAMARDVS...

XP_057776805.1
MVHFVSLGEVEQASLPPRGWNSYDSFCWTISEEEFLQNAELVAHRLRSHGYEYVVVDYLWYRRKVEGAYVDSLGFDVIDEWGRMKPDPGRWPSSRDGKGFTKVAEEVHKMGLKFGIHVMRGISTQAFNANTPILDVNTGKAYEESGRQWHAKDIGIKERTCAWMQNGFMSVDTKLGAGRAFLRSLYQQYADWGVDFVKHDCVFGKDFNLEEISYVSKVLTELNRPVVYSLSPGTSVTPAMARDVSNLVNMYRVTADDWDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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