当前解析结果
SmilChr07G001850| 统一新 Gene ID | SmilChr07G001850 |
|---|---|
| 名称 | SmilChr07G001850 |
| 描述 | T-complex protein 1 subunit epsilon-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16026199 - 16030567 / + |
| NCBI Gene ID | LOC130995535 |
|---|---|
| GeneID | 130995535 |
| locus_tag | - |
| NCBI Name | LOC130995535 |
| 原始查询 | LOC130995535 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | T-complex protein 1 subunit epsilon-like |
| 产物 | T-complex protein 1 subunit epsilon-like |
| Arabidopsis | AT1G24510 (AT1G24510)TCP-1/cpn60 chaperonin family protein [Source:NCBI gene (formerly Entrezgene);Acc:839066] identity=89.91; qcov=1.0; evalue=0.0; confidence=high |
| Rice | Os06g0562600- identity=90.84; qcov=1.0; evalue=0.0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005832 (chaperonin-containing T-complex); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | - |
| Pfam | PF00118 (Cpn60_TCP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995535 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057776840.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057776840.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057776840.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057776840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16026480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr7:16026609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B44,C15,C17,C21 |
Chr7:16029455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C5,D5 |
Chr7:16029920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:16029940 |
A |
AC |
1bp_insertion | frameshift_variant | 52 | A10,A11,A16,A19,A22,A5,B103,B105,B108,B121,B122,B137,B21,B27,B29,B33,B34,B45,B50,B58,B60,B63,B66,B69,B72,B78,B85,B9,B93,B98,C14,C19,C21,C30,C32,C33,C34,C35,C4,C44,C47,C5,C51,C6,C68,C73,C78,C79,D1,D11,D5,D8 |
Chr7:16029942 |
A |
ACT |
2bp_insertion | frameshift_variant | 52 | A10,A11,A16,A19,A22,A5,B103,B105,B108,B121,B122,B137,B21,B27,B29,B33,B34,B45,B50,B58,B60,B63,B66,B69,B72,B78,B85,B9,B93,B98,C14,C19,C21,C30,C32,C33,C34,C35,C4,C44,C47,C5,C51,C6,C68,C73,C78,C79,D1,D11,D5,D8 |
Chr7:16029953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C73,D3 |
Chr7:16030139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:16030194 |
TG |
T |
1bp_deletion | frameshift_variant | 5 | A2,A6,B21,C7,C85 |
Chr7:16030194 |
TG |
T |
1bp_deletion | CDS_variant | 5 | A2,A6,B21,C7,C85 |
Chr7:16030256 |
G |
GC |
1bp_insertion | frameshift_variant | 4 | B21,C30,C66,C85 |
Chr7:16030256 |
G |
GC |
1bp_insertion | CDS_variant | 4 | B21,C30,C66,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776840.1PF00118
Cpn60_TCP1 40-531 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776840.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 40 | 531 | 9.7e-164 | 546.4 | TCP-1/cpn60 chaperonin family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。