当前解析结果
SmilChr07G001858| 统一新 Gene ID | SmilChr07G001858 |
|---|---|
| 名称 | SmilChr07G001858 |
| 描述 | trans-Golgi network-localized SYP41-interacting protein 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16097785 - 16107250 / - |
| NCBI Gene ID | LOC130995544 |
|---|---|
| GeneID | 130995544 |
| locus_tag | - |
| NCBI Name | LOC130995544 |
| 原始查询 | LOC130995544 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | trans-Golgi network-localized SYP41-interacting protein 1 |
| 产物 | trans-Golgi network-localized SYP41-interacting protein 1 |
| Arabidopsis | AT1G24460 (TNO1)TGN-related, localized SYP41 interacting protein [Source:NCBI gene (formerly Entrezgene);Acc:839062] identity=34.4; qcov=0.924; evalue=0; confidence=low |
| Rice | Os02g0598300- identity=33.9; qcov=0.183; evalue=1.24e-40; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995544 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057776854.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057776854.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057776854.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057776854.1 |
| 5 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057776854.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16098030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr7:16099492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:16099593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B26,B64 |
Chr7:16099916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:16100228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B26,B64 |
Chr7:16100484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:16100600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B131,B56,B96,C72 |
Chr7:16100823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:16100950 |
CA |
C |
1bp_deletion | frameshift_variant | 39 | A1,A10,A18,A21,A24,A3,A5,A9,B115,B124,B20,B22,B34,B35,B53,B54,B57,B66,B7,B8,B87,B94,B99,C2,C28,C30,C35,C40,C41,C48,C5,C58,C61,C62,C70,C81,D10,D5,D9 |
Chr7:16100952 |
A |
AT |
1bp_insertion | frameshift_variant | 48 | A1,A10,A18,A21,A22,A24,A3,A5,A9,B108,B110,B115,B124,B13,B20,B22,B34,B35,B47,B53,B54,B57,B66,B7,B8,B87,B94,B99,C2,C24,C28,C30,C35,C40,C41,C48,C5,C58,C59,C61,C62,C70,C81,C9,D10,D5,D6,D9 |
Chr7:16100956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B65,C60,D11,D7 |
Chr7:16102210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。