Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001860`

染色体: Chr07 坐标: 16127593-16133711 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001860`
名称	SmilChr07G001860
描述	probable LRR receptor-like serine/threonine-protein kinase At1g67720
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16127593 - 16133711 / `-`

ID 对照

NCBI Gene ID	`LOC130995547`
GeneID	`130995547`
locus_tag	`-`
NCBI Name	`LOC130995547`
原始查询	`LOC130995547`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g67720
产物	probable LRR receptor-like serine/threonine-protein kinase At1g67720
Arabidopsis	`AT1G67720` (AT1G67720) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843097] identity=68.4; qcov=1; evalue=0; confidence=high
Rice	`Os11g0102900` - identity=51.7; qcov=0.934; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like)
InterPro	-
eggNOG	-
NR	GeneID:130995547

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776856.1`
2	Nucleus	细胞核	0.00000	`XP_057776856.1`
3	Chromosome	染色体	0.00000	`XP_057776856.1`
4	Centromere	着丝粒	0.00000	`XP_057776856.1`
5	Chromatin	染色质	0.00000	`XP_057776856.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16127865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr7:16128068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr7:16129554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16129581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:16129589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B26,B64
`Chr7:16129722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr7:16130808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B8,B95,C10
`Chr7:16132143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:16132210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr7:16132526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:16132856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B101
`Chr7:16132949`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776856.1

953 aa

476

953

Malectin_like

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF12819 Malectin_like 28-361 aa PF00560 LRR_1 462-484 aa PF00560 LRR_1 487-505 aa PF07714 PK_Tyr_Ser-Thr 610-900 aa PF00069 Pkinase 612-843 aa

XP_057776857.1

928 aa

464

928

Malectin_like

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF12819 Malectin_like 28-361 aa PF00560 LRR_1 462-484 aa PF00560 LRR_1 487-505 aa PF07714 PK_Tyr_Ser-Thr 610-875 aa PF00069 Pkinase 612-818 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776856.1`	Pfam	`PF12819`	Malectin_like	Domain	28	361	5.7e-87	292.8	Malectin-like domain
`XP_057776856.1`	Pfam	`PF00560`	LRR_1	Repeat	462	484	5.3e-10	38.2	Leucine Rich Repeat
`XP_057776856.1`	Pfam	`PF00560`	LRR_1	Repeat	487	505	5.3e-10	38.2	Leucine Rich Repeat
`XP_057776856.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	610	900	3.9e-49	168.0	Protein tyrosine and serine/threonine kinase
`XP_057776856.1`	Pfam	`PF00069`	Pkinase	Domain	612	843	2.3e-41	142.7	Protein kinase domain
`XP_057776857.1`	Pfam	`PF12819`	Malectin_like	Domain	28	361	5.3e-87	292.9	Malectin-like domain
`XP_057776857.1`	Pfam	`PF00560`	LRR_1	Repeat	462	484	5.1e-10	38.2	Leucine Rich Repeat
`XP_057776857.1`	Pfam	`PF00560`	LRR_1	Repeat	487	505	5.1e-10	38.2	Leucine Rich Repeat
`XP_057776857.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	610	875	1.6e-50	172.5	Protein tyrosine and serine/threonine kinase
`XP_057776857.1`	Pfam	`PF00069`	Pkinase	Domain	612	818	2.2e-44	152.6	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920874.1
CCGCTGTCATATACTAATACTAATATTCTTTTCCAAAGCAAAAAAAAAGCTTGACTGAAAATGAAGCTCAACGAAAAAGTAGGATTATCAAATCATTCGACCGTGAATGAACATTGCGCACATCCTCATTAGTCACAAAAGCTAAAGTTGAGTTGAACAAGAATGCGCTGCATTTTAGCATCACCTACACATCTCTTCTTTATTCCTTGATCCACAAAATTCAAGCAGTTTCTGATCTCAAACATGGGTTATTTCCCCTA...

XM_057920873.1
CATATACTAATACTAATATTCTTTTCCAAAGCAAAAAAAAAGCTTGACTGAAAATGAAGCTCAACGAAAAAGTAGGATTATCAAATCATTCGACCGTGAATGAACATTGCGCACATCCTCATTAGTCACAAAAGCTAAAGTTGAGTTGAACAAGAATGCGCTGCATTTTAGCATCACCTACACATCTCTTCTTTATTCCTTGATCCACAAAATTCAAGCAGTTTCTGATCTCAAACATGGGTTATTTCCCCTACATGTAT...

CDS

2 records

下载 CDS FASTA

LOC130995547
ATGGGTTATTTCCCCTACATGTATGTTATATTTTGTGTAATAATTCCAACCATTTTGGGCCAAGTTACAGAGTTCATTAGCATAGACTGCGGAGGCACAAGCAGCTACACGGACAACAGCACCGGCCTGGCGTGGATCTCAGACAAGGGAATCCAAGGCGACGGCGTGTCAGTGAGAGTGGGAGATATAAATGGAAACTCACAGCAGCAGTATCAGACAAGGAGGGATTTCCCAACAGACAGCAAGAAGTACTGCTACAC...

Protein

2 records

下载 Protein FASTA

XP_057776856.1
MGYFPYMYVIFCVIIPTILGQVTEFISIDCGGTSSYTDNSTGLAWISDKGIQGDGVSVRVGDINGNSQQQYQTRRDFPTDSKKYCYTLTTEERRRYIVRATFLYGASVSQGAYPKFQLYLDTTKWSTVTVMEASRIYVKEMIIRAPSHSVDVCLCCATTGSPFISTLEMRPLNLSMYTTDYEDDFYMKVAARVNFGAPSQEAIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTRNIDVNTREYPPVKVMQTAVIG...

XP_057776857.1
MGYFPYMYVIFCVIIPTILGQVTEFISIDCGGTSSYTDNSTGLAWISDKGIQGDGVSVRVGDINGNSQQQYQTRRDFPTDSKKYCYTLTTEERRRYIVRATFLYGASVSQGAYPKFQLYLDTTKWSTVTVMEASRIYVKEMIIRAPSHSVDVCLCCATTGSPFISTLEMRPLNLSMYTTDYEDDFYMKVAARVNFGAPSQEAIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTRNIDVNTREYPPVKVMQTAVIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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