Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001862`

染色体: Chr07 坐标: 16137374-16139517 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001862`
名称	SmilChr07G001862
描述	E3 ubiquitin-protein ligase AIRP2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16137374 - 16139517 / `+`

ID 对照

NCBI Gene ID	`LOC130995549`
GeneID	`130995549`
locus_tag	`-`
NCBI Name	`LOC130995549`
原始查询	`LOC130995549`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase AIRP2-like
产物	E3 ubiquitin-protein ligase AIRP2-like
Arabidopsis	`AT3G47160` (AT3G47160) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823869] identity=42; qcov=1.05; evalue=1.21e-54; confidence=medium
Rice	`Os07g0275300` - identity=45; qcov=1.11; evalue=7.42e-59; confidence=high
GO	GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3)
InterPro	-
eggNOG	-
NR	GeneID:130995549

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057776859.1`
2	Nucleus	细胞核	0.60000	`XP_057776859.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057776861.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057776861.1`
5	Chromosome	染色体	0.00000	`XP_057776859.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16137939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B109,C11,C69,C75
`Chr7:16137968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:16137997`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A11
`Chr7:16137997`	`GC`	`G`	1bp_deletion	CDS_variant	1	A11
`Chr7:16138888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B22,C67
`Chr7:16138890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr7:16139083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:16139125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:16139137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B34
`Chr7:16139168`	`GC`	`G`	1bp_deletion	frameshift_variant	7	A21,B115,B124,B20,C28,C62,D5
`Chr7:16139333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B87,C48
`Chr7:16139392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776859.1

234 aa

117

234

zf-C3HC4_3

zf-RING_2

PF13920 zf-C3HC4_3 134-180 aa PF13639 zf-RING_2 136-175 aa

XP_057776860.1

233 aa

116

233

zf-C3HC4_3

zf-RING_2

PF13920 zf-C3HC4_3 133-179 aa PF13639 zf-RING_2 135-174 aa

XP_057776861.1

191 aa

191

zf-C3HC4_3

zf-RING_2

PF13920 zf-C3HC4_3 91-137 aa PF13639 zf-RING_2 93-132 aa

XP_057776862.1

190 aa

190

zf-C3HC4_3

zf-RING_2

PF13920 zf-C3HC4_3 90-136 aa PF13639 zf-RING_2 92-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776859.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	134	180	1.1e-07	32.2	Zinc finger, C3HC4 type (RING finger)
`XP_057776859.1`	Pfam	`PF13639`	zf-RING_2	Domain	136	175	3.4e-07	31.1	Ring finger domain
`XP_057776860.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	133	179	1.1e-07	32.3	Zinc finger, C3HC4 type (RING finger)
`XP_057776860.1`	Pfam	`PF13639`	zf-RING_2	Domain	135	174	3.3e-07	31.2	Ring finger domain
`XP_057776861.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	91	137	8e-08	32.7	Zinc finger, C3HC4 type (RING finger)
`XP_057776861.1`	Pfam	`PF13639`	zf-RING_2	Domain	93	132	2.4e-07	31.6	Ring finger domain
`XP_057776862.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	90	136	7.9e-08	32.7	Zinc finger, C3HC4 type (RING finger)
`XP_057776862.1`	Pfam	`PF13639`	zf-RING_2	Domain	92	131	2.4e-07	31.6	Ring finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057920876.1
ATTCTTTTCTTGTCTTCAACTAGGTAGGACAAGTTTCAACACCAAGAAAACTCTCTCCTAATCTCCTTTATTTTCTTCTTTCAATTTGCTCTTTATATAATTCCTTCCACCAAAAAGCTCCTTTTGTGATTGTCTCATCTTTTTTGTTTTCTACTCTTTTCTAAAAGTTGAATTTTTTTTTGAGGATCGAATGTGGCAGAGACAGGTTCGAAGATGTTCTACGAGGGAATGGATCAATGCCGTTGAAGCTGATATTCACC...

XM_057920877.1
CTTCTTTCAATTTGCTCTTTATATAATTCCTTCCACCAAAAAGCTCCTTTTGTGATTGTCTCATCTTTTTTGTTTTCTACTCTTTTCTAAAAGTTGAATTTTTTTTTGAGGATCGAATGTGGCAGAGACAGGTTCGAAGATGTTCTACGAGGGAATGGATCAATGCCGTTGAAGCTGATATTCACCATGCCAACACTTTGGTGGCTGCTCTTCCCAGAAATATTATAGGAGGGGATACTGTTCAAATGAAACTATGTTTG...

CDS

4 records

下载 CDS FASTA

LOC130995549
ATGTGGCAGAGACAGGTTCGAAGATGTTCTACGAGGGAATGGATCAATGCCGTTGAAGCTGATATTCACCATGCCAACACTTTGGTGGCTGCTCTTCCCAGAAATATTATAGGAGGGGATACTGTTCAAATGAAACTATGTTTGAGCCCATTTGCACCGTTGTTGCTTTTTGTACTAGAATGGATGGACTGCAGCTGTTTCGACACCTTTCTCACTTGTTTAGGCCTCTTTCACGTCCTTGTATACAAGGTATACGCGGA...

Protein

4 records

下载 Protein FASTA

XP_057776859.1
MWQRQVRRCSTREWINAVEADIHHANTLVAALPRNIIGGDTVQMKLCLSPFAPLLLFVLEWMDCSCFDTFLTCLGLFHVLVYKVYADEMAIASPEERRATLREFYAAVIYPMAKQLEGNVAEVMEENLKSECEAEECGICMDMDDCVVLPNCAHSMCITCFNDWCARSRSCPFCRASLNRVASADLWVLTSRSDAVDALTLAKDHLTRFYLYIQSLPLLSPSQHSSLLMYNYLI

XP_057776860.1
MWQRQVRRCSTREWINAVEADIHHANTLVAALPRNIIGGDTVQMKLCLSPFAPLLLFVLEWMDCSCFDTFLTCLGLFHVLVYKVYADEMAIASPEERRATLREFYAVIYPMAKQLEGNVAEVMEENLKSECEAEECGICMDMDDCVVLPNCAHSMCITCFNDWCARSRSCPFCRASLNRVASADLWVLTSRSDAVDALTLAKDHLTRFYLYIQSLPLLSPSQHSSLLMYNYLI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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