Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001872`

染色体: Chr07 坐标: 16198650-16205594 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001872`
名称	SmilChr07G001872
描述	ATP sulfurylase 2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16198650 - 16205594 / `+`

ID 对照

NCBI Gene ID	`LOC130995560`
GeneID	`130995560`
locus_tag	`-`
NCBI Name	`LOC130995560`
原始查询	`LOC130995560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP sulfurylase 2
产物	ATP sulfurylase 2
Arabidopsis	`AT1G19920` (APS2) Pseudouridine synthase/archaeosine transglycosylase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:838580] identity=74; qcov=1; evalue=0; confidence=high
Rice	`Os03g0743900` (OsATPS) - identity=73.9; qcov=0.872; evalue=0; confidence=high
GO	GO:0000103 (sulfate assimilation); GO:0004020 (adenylylsulfate kinase activity); GO:0004781 (sulfate adenylyltransferase (ATP) activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00261 (Monobactam biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
Pfam	PF01747 (ATP-sulfurylase); PF14306 (PUA_2)
InterPro	-
eggNOG	-
NR	GeneID:130995560

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776871.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057776871.1`
3	Nucleus	细胞核	0.00000	`XP_057776871.1`
4	Chromosome	染色体	0.00000	`XP_057776871.1`
5	Centromere	着丝粒	0.00000	`XP_057776871.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16199022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:16199037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,C15,C17,C21
`Chr7:16200785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr7:16200930`	`CGT`	`C`	2bp_deletion	frameshift_variant	3	B109,B59,C79
`Chr7:16200930`	`CGT`	`C`	2bp_deletion	CDS_variant	3	B109,B59,C79
`Chr7:16200959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B59,C26,C79
`Chr7:16200964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B59,C26,C79
`Chr7:16200998`	`T`	`TAA`	2bp_insertion	frameshift_variant	39	A16,A21,A24,A5,A6,B10,B110,B114,B115,B122,B124,B137,B17,B20,B44,B51,B64,B65,B66,B8,B88,B91,B92,B97,C1,C13,C15,C21,C24,C28,C3,C38,C58,C73,C75,C80,C85,D2,D4
`Chr7:16201020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A5,B8,C58
`Chr7:16202268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B31,C39,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776871.1

483 aa

242

483

PUA_2

ATP-sulfurylase

PF14306 PUA_2 72-234 aa PF01747 ATP-sulfurylase 244-465 aa

XP_057776872.1

483 aa

242

483

PUA_2

ATP-sulfurylase

PF14306 PUA_2 72-234 aa PF01747 ATP-sulfurylase 244-465 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776871.1`	Pfam	`PF14306`	PUA_2	Domain	72	234	1.4e-45	155.5	PUA-like domain
`XP_057776871.1`	Pfam	`PF01747`	ATP-sulfurylase	Domain	244	465	7.3e-68	228.8	ATP-sulfurylase
`XP_057776872.1`	Pfam	`PF14306`	PUA_2	Domain	72	234	1.4e-45	155.5	PUA-like domain
`XP_057776872.1`	Pfam	`PF01747`	ATP-sulfurylase	Domain	244	465	7.3e-68	228.8	ATP-sulfurylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920888.1
AAAATAAAAAAATTCCCTCAAAAAAAAAAAAAATTTAAAACACACGCACACACTGACACACAAGCAAACATCCACCACCATTGAAGTCGAGTAGCAAATATTTAGCCAAAAAGAAACATGTGGACGTCTCTTCACTCTGCTGCATCTCCATATATTTCAATTCCAATCTCCTAACCCAAATATATATACTCTCATCTCATCAATAAATCCTACCAAATTTATAGGATCCCAGTGAGCAAAAATCCCACTTTCCAAACCAA...

XM_057920889.1
GCAAACATCCACCACCATTGAAGTCGAGTAGCAAATATTTAGCCAAAAAGAAACATGTGGACGTCTCTTCACTCTGCTGCATCTCCATATATTTCAATTCCAATCTCCTAACCCAAATATATATACTCTCATCTCATCAATAAATCCTACCAAATTTATAGGATCCCAGTGAGCAAAAATCCCACTTTCCAAACCAAAAAATTCAATTTTCTTTTTCATTTGGTCATTACTACATACACCAAAAAAAAATGTCGGTAACA...

CDS

2 records

下载 CDS FASTA

LOC130995560
ATGTCGGTAACAATTAGGCTACAGCATATGAGCAGTGCATCATCATCAACTGCCATAACCACAATCAAGAAAAGCCGTTACGCCACCAAATTTCACCCCAAAACCATATACCATCCCAACTCATTGGCCCCACTTGTGTTCCCTCACAAAAAGATGCAGTCTTTATCAAAATCTCGCTCCGACAATCCCGCAGTGACGGTGAAGAGCTCCCTGATAGAGCCGGACGGCGGCGCGCTGGTGGATCTCGTGGTGCCTGAGAG...

Protein

2 records

下载 Protein FASTA

XP_057776871.1
MSVTIRLQHMSSASSSTAITTIKKSRYATKFHPKTIYHPNSLAPLVFPHKKMQSLSKSRSDNPAVTVKSSLIEPDGGALVDLVVPESQRAAKIAEAEALPKVRLSKIDVEWVHVVSEGWASPLKGFMREDEYLQSLHFNCVRMEDGSLVNMSLPIVLPIDDEVKGQIGDSSSVALVGTDGDLVAILSSIEIYKHNKEERIARTWGTTAPGLPYVEEVISAAGNWLIGGDLQVLKPIKYNDGLDHYRLSPKQLRDEFDRRK...

XP_057776872.1
MSVTIRLQHMSSASSSTAITTIKKSRYATKFHPKTIYHPNSLAPLVFPHKKMQSLSKSRSDNPAVTVKSSLIEPDGGALVDLVVPESQRAAKIAEAEALPKVRLSKIDVEWVHVVSEGWASPLKGFMREDEYLQSLHFNCVRMEDGSLVNMSLPIVLPIDDEVKGQIGDSSSVALVGTDGDLVAILSSIEIYKHNKEERIARTWGTTAPGLPYVEEVISAAGNWLIGGDLQVLKPIKYNDGLDHYRLSPKQLRDEFDRRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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