Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001880`

染色体: Chr07 坐标: 16261804-16266591 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001880`
名称	SmilChr07G001880
描述	trihelix transcription factor GT-4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16261804 - 16266591 / `+`

ID 对照

NCBI Gene ID	`LOC130995567`
GeneID	`130995567`
locus_tag	`-`
NCBI Name	`LOC130995567`
原始查询	`LOC130995567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trihelix transcription factor GT-4-like
产物	trihelix transcription factor GT-4-like
Arabidopsis	`AT1G13450` (GT-1) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837905] identity=64.4; qcov=0.834; evalue=2.23e-118; confidence=high
Rice	`Os04g0486400` (rml1) - identity=55.2; qcov=0.872; evalue=5.92e-97; confidence=high
GO	-
KEGG	-
Pfam	PF13837 (Myb_DNA-bind_4); PF26214 (Ubiquitin_GT-1)
InterPro	-
eggNOG	-
NR	GeneID:130995567

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776881.1`
2	Chromosome	染色体	0.00000	`XP_057776881.1`
3	Centromere	着丝粒	0.00000	`XP_057776881.1`
4	Chromatin	染色质	0.00000	`XP_057776881.1`
5	Telomere	端粒	0.00000	`XP_057776881.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16262181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B132,B71,C26
`Chr7:16266207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:16266294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776881.1

402 aa

201

402

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 270-330 aa PF26214 Ubiquitin_GT-1 335-400 aa

XP_057776882.1

389 aa

194

389

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 257-317 aa PF26214 Ubiquitin_GT-1 322-387 aa

XP_057776883.1

387 aa

194

387

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 255-315 aa PF26214 Ubiquitin_GT-1 320-385 aa

XP_057776884.1

374 aa

187

374

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 242-302 aa PF26214 Ubiquitin_GT-1 307-372 aa

XP_057776885.1

348 aa

174

348

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 270-330 aa

XP_057776886.1

335 aa

168

335

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 257-317 aa

XP_057776887.1

333 aa

166

333

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 255-315 aa

XP_057776888.1

320 aa

160

320

Myb_DNA-bind_4

Ubiquitin_GT-1

PF13837 Myb_DNA-bind_4 67-152 aa PF26214 Ubiquitin_GT-1 242-302 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776881.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	1.1e-20	74.5	Myb/SANT-like DNA-binding domain
`XP_057776881.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	270	330	4e-43	145.8	GT-1-like, ubiquitin-like domain
`XP_057776881.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	335	400	4e-43	145.8	GT-1-like, ubiquitin-like domain
`XP_057776882.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	1e-20	74.6	Myb/SANT-like DNA-binding domain
`XP_057776882.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	257	317	3.5e-43	146.0	GT-1-like, ubiquitin-like domain
`XP_057776882.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	322	387	3.5e-43	146.0	GT-1-like, ubiquitin-like domain
`XP_057776883.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	1e-20	74.6	Myb/SANT-like DNA-binding domain
`XP_057776883.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	255	315	3.6e-43	146.0	GT-1-like, ubiquitin-like domain
`XP_057776883.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	320	385	3.6e-43	146.0	GT-1-like, ubiquitin-like domain
`XP_057776884.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	9.1e-21	74.8	Myb/SANT-like DNA-binding domain
`XP_057776884.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	242	302	3.2e-43	146.2	GT-1-like, ubiquitin-like domain
`XP_057776884.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	307	372	3.2e-43	146.2	GT-1-like, ubiquitin-like domain
`XP_057776885.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	8.4e-21	74.9	Myb/SANT-like DNA-binding domain
`XP_057776885.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	270	330	5.6e-10	39.6	GT-1-like, ubiquitin-like domain
`XP_057776886.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	7.6e-21	75.0	Myb/SANT-like DNA-binding domain
`XP_057776886.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	257	317	5.2e-10	39.8	GT-1-like, ubiquitin-like domain
`XP_057776887.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	7.6e-21	75.0	Myb/SANT-like DNA-binding domain
`XP_057776887.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	255	315	5.3e-10	39.7	GT-1-like, ubiquitin-like domain
`XP_057776888.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	67	152	6.6e-21	75.2	Myb/SANT-like DNA-binding domain
`XP_057776888.1`	Pfam	`PF26214`	Ubiquitin_GT-1	Domain	242	302	4.9e-10	39.8	GT-1-like, ubiquitin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057920904.1
AATTTCTGGTTGTTTGGTTATTAAATATTCTTAATATAATTTCACATTAACACTAACTTGAGTAGACTATTACCCGAGGCGAGAATGAGTTTTAGGTAGAACCATCTTCATCTTCTTAAACCGAAAACAGTTAGATTTTCTGAGCTACTCTACATCCCAAAATCTCAAATCCCCTCAATTCTTGAAAAGGTTAAATTTTAAAGAAAAAATGTACTCGGAAAAGGGTCAAGAACAAGAGGAATCCGCCATAGATTTCTACA...

XM_057920900.1
AATTTCTGGTTGTTTGGTTATTAAATATTCTTAATATAATTTCACATTAACACTAACTTGAGTAGACTATTACCCGAGGCGAGAATGAGTTTTAGGTAGAACCATCTTCATCTTCTTAAACCGAAAACAGTTAGATTTTCTGAGCTACTCTACATCCCAAAATCTCAAATCCCCTCAATTCTTGAAAAGGTTAAATTTTAAAGAAAAAATGTACTCGGAAAAGGGTCAAGAACAAGAGGAATCCGCCATAGATTTCTACA...

CDS

8 records

下载 CDS FASTA

LOC130995567
ATGTACTCGGAAAAGGGTCAAGAACAAGAGGAATCCGCCATAGATTTCTACAACAGCAAAGAAAGCTCACCCAACGAAAACAACATGATCATCCAAATCAGCGACACCACCAGCGGCGGAGACGATCCCTCCACCGCGGCGAACCAGAGTTCATCCAACCCACCACCGCCTTCACCTGCTCCCAAGAAACGGGCCGAGACATGGGCTCAAGAGGAAACCAGGGTCCTCGTATCTCTCCGCAGAGAAATCGATTTTCTGTT...

Protein

8 records

下载 Protein FASTA

XP_057776881.1
MYSEKGQEQEESAIDFYNSKESSPNENNMIIQISDTTSGGDDPSTAANQSSSNPPPPSPAPKKRAETWAQEETRVLVSLRREIDFLFNTSKSNKHLWDSISMKMRGKGFDRSPTMCTDKWRNLLKEYKKSKQNNPDTNGNSKMNFYKEIEEIMRERNKNGNCWKNSAASNDAAAAASKVDSFMQFADKDEVYCIKGVASASTEGIDDASLTFGPVEGNGRSALNLERRLDHEAHPLAITAADTVGASGASPWNWRETPGN...

XP_057776882.1
MYSEKGQEQEESAIDFYNSKESSPNENNMIIQISDTTSGGDDPSTAANQSSSNPPPPSPAPKKRAETWAQEETRVLVSLRREIDFLFNTSKSNKHLWDSISMKMRGKGFDRSPTMCTDKWRNLLKEYKKSKQNNPDTNGNSKMNFYKEIEEIMRERNKNGNCWKNSAASNDAAAAASKVDSFMQFADKDEVYCIKGVASASTEGNGRSALNLERRLDHEAHPLAITAADTVGASGASPWNWRETPGNGEHRNTYDGRVIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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