当前解析结果
SmilChr07G001891| 统一新 Gene ID | SmilChr07G001891 |
|---|---|
| 名称 | SmilChr07G001891 |
| 描述 | uncharacterized SmilChr07G001891 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16340194 - 16343054 / + |
| NCBI Gene ID | LOC130995577 |
|---|---|
| GeneID | 130995577 |
| locus_tag | - |
| NCBI Name | LOC130995577 |
| 原始查询 | LOC130995577 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0601700; species=rice; confidence=high |
| 产物 | hit=Os02g0601700; species=rice; confidence=high |
| Arabidopsis | AT3G01750 (AT3G01750)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821087] identity=45.3; qcov=1.03; evalue=0; confidence=high |
| Rice | Os02g0601700- identity=45.9; qcov=1.1; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995577 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776906.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776906.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776906.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776906.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776906.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16340636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr7:16340643 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B140,C41 |
Chr7:16340643 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B140,C41 |
Chr7:16340675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr7:16340761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:16340899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B50 |
Chr7:16340967 |
C |
CGG |
2bp_insertion | frameshift_variant | 2 | B36,C61 |
Chr7:16340967 |
C |
CGG |
2bp_insertion | CDS_variant | 2 | B36,C61 |
Chr7:16341203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C42,C65,D11 |
Chr7:16341779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,B68,C76 |
Chr7:16341782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B28,C72,C81 |
Chr7:16342002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776906.1PF12796
Ank_2 180-264 aa
PF00023
Ank 210-231 aa
PF13637
Ank_4 214-263 aa
PF00023
Ank 244-264 aa
PF00023
Ank 326-358 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776906.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 180 | 264 | 5.7e-31 | 107.7 | Ankyrin repeats (3 copies) |
XP_057776906.1 |
Pfam | PF00023 |
Ank | Repeat | 210 | 231 | 6.3e-26 | 89.7 | Ankyrin repeat |
XP_057776906.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 214 | 263 | 4.7e-20 | 71.9 | Ankyrin repeats (many copies) |
XP_057776906.1 |
Pfam | PF00023 |
Ank | Repeat | 244 | 264 | 6.3e-26 | 89.7 | Ankyrin repeat |
XP_057776906.1 |
Pfam | PF00023 |
Ank | Repeat | 326 | 358 | 6.3e-26 | 89.7 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。